View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14329_low_11 (Length: 238)

Name: NF14329_low_11
Description: NF14329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14329_low_11
NF14329_low_11
[»] chr5 (1 HSPs)
chr5 (9-220)||(24888080-24888291)
[»] chr1 (3 HSPs)
chr1 (24-204)||(79106-79294)
chr1 (12-178)||(25664278-25664452)
chr1 (127-204)||(25132150-25132227)
[»] chr3 (3 HSPs)
chr3 (12-198)||(19287773-19287967)
chr3 (117-204)||(14405071-14405156)
chr3 (117-195)||(22991306-22991384)
[»] scaffold0637 (1 HSPs)
scaffold0637 (126-199)||(7545-7618)
[»] chr4 (3 HSPs)
chr4 (127-204)||(18447190-18447267)
chr4 (144-204)||(18778849-18778908)
chr4 (142-204)||(19603551-19603612)
[»] chr2 (1 HSPs)
chr2 (128-204)||(17555683-17555760)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 24888080 - 24888291
Alignment:
Q  9 ttatcccatcttttagtcagatgagaagtcattaatacttggaagtagaacaactgttgcttctcttgctgctcagattgcttatgaatagctctctcgt 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24888080 ttatcccatcttttagtcagatgagaagtcattaagacttggaagtagaacaactgttgcgtctcttgctgctcagattgcttatgaatagctctctcgt 24888179  T
Q  109 tttgtctaagtcaaattgcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagactactaa 208  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24888180 tttgtcgaagtcaaattgcaaggtacctaaatctgcactacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagactactaa 24888279  T
Q  209 aaaaggatataa 220  Q
    || |||||||||    
T  24888280 aacaggatataa 24888291  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 79106 - 79294
Alignment:
Q  24 gtcagatgagaagtcattaatacttggaagtagaacaactgttgcttctcttgctgctcagattgcttat-gaatagctctctc-gtttt------gtct 115  Q
    |||||||||||||||| ||| |||||||||| ||||||||| || |||||||||| ||||||||||||   | ||||||||||| |||||      |||     
T  79106 gtcagatgagaagtcactaagacttggaagtggaacaactgctgattctcttgcttctcagattgctttccggatagctctctctgttttattgatgtca 79205  T
Q  116 aagtcaaattgcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagacta 204  Q
     |||||||| ||||||||||| |||||| ||||| ||||||| | ||| |||||||||||||||||||||| |||||||||||| ||||    
T  79206 gagtcaaatagcaaggtacctgaatctgaaccacacataaaaaagctcgcaagggatttaagaagagcttgtgatagagaattatacta 79294  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 25664278 - 25664452
Alignment:
Q  12 tcccatcttttagtcagatgagaagtcattaatacttggaagtagaacaactgttgcttctcttgctgctcagattgcttat-gaatagctctctcg-tt 109  Q
    |||||||| || || ||| || |||||| ||| ||||| |||| |||||  |||||||||||||||| |||| |||||||   |||||||| ||||| ||    
T  25664278 tcccatctcttcgttagaggataagtcactaaaacttgaaagtggaacagttgttgcttctcttgcttctcatattgctttccgaatagctatctcgatt 25664377  T
Q  110 ttgtctaa------gtcaaattgcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaaga 178  Q
    || || ||      ||| ||||| ||||||| |||||||||||||||||||||||||||| |||  |||||||||    
T  25664378 ttatcaaaatcggagtcgaattgtaaggtacgtaaatctgcaccacgcataaaacaactcgcaaaagatttaaga 25664452  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 25132150 - 25132227
Alignment:
Q  127 caaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagacta 204  Q
    |||||||||| ||| ||||||| ||||||||| |||| || |   ||||||||||||||||||||||||||| |||||    
T  25132150 caaggtacctgaatgtgcaccatgcataaaacgactcacacgatttttaagaagagcttgcgatagagaattggacta 25132227  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 19287967 - 19287773
Alignment:
Q  12 tcccatcttttagtcagatgagaagtcattaatacttggaagtagaacaactgttgcttctcttgctgctcagattgcttat-gaatagctctctcg-tt 109  Q
    |||||||| || ||||||||||||||||  || || ||||||| |||||  || ||||||||||| |  || |||||||| | ||||||||||| || ||    
T  19287967 tcccatctcttcgtcagatgagaagtcacgaagacgtggaagttgaacagttgatgcttctcttggttatcggattgcttttcgaatagctctcccgatt 19287868  T
Q  110 ttgtctaagtcaaatt------gcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaatt 198  Q
    || || |||||| |||      |||||| |||| ||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  19287867 ttatcgaagtcagattcgaatagcaagggacctgaatctgcaccatgcataaaacaactcgcaaggaattaaagaagagcttgcggtagagaatt 19287773  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 14405071 - 14405156
Alignment:
Q  117 agtcaaattgcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagacta 204  Q
    |||||||| ||||||||| | ||| |||||||| |||||||||||||  || || |||||||||||||||| ||||||||||||||||    
T  14405071 agtcaaatagcaaggtacttgaatttgcaccacacataaaacaactc--aatggttttaagaagagcttgcaatagagaattagacta 14405156  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 22991306 - 22991384
Alignment:
Q  117 agtcaaattgcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagaga 195  Q
    ||||||||  |||||||  | ||||||| ||||||| |||||||||||||||| |||||||| |||||||||| |||||    
T  22991306 agtcaaataacaaggtatttgaatctgcgccacgcaaaaaacaactctcaaggaatttaagaggagcttgcgaaagaga 22991384  T

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Target: scaffold0637 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 7618 - 7545
Alignment:
Q  126 gcaaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaatta 199  Q
    ||||||||| | ||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  7618 gcaaggtacttgaatttgcaccacggataaaacaactcacaagggatttaagaagagcttgcggtagagaatta 7545  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 18447267 - 18447190
Alignment:
Q  127 caaggtacctaaatctgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagacta 204  Q
    |||||||| | |||||  ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  18447267 caaggtacttgaatctttaccacacataaaacaactcgcaacggatttaagaagagcttgcgatagagaattagacta 18447190  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 18778908 - 18778849
Alignment:
Q  144 caccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagacta 204  Q
    ||||||||||||||||||||  |||| ||||| ||||||||||||||||| ||||||||||    
T  18778908 caccacgcataaaacaactca-aaggaatttaggaagagcttgcgatagataattagacta 18778849  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 19603612 - 19603551
Alignment:
Q  142 tgcaccacgcataaaacaactctcaagggatttaagaagagcttgcgatagagaattagacta 204  Q
    |||||||| |||||||||| || |||| | ||||||||||||||| |||||||||||||||||    
T  19603612 tgcaccacacataaaacaattcgcaagag-tttaagaagagcttgtgatagagaattagacta 19603551  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 17555683 - 17555760
Alignment:
Q  128 aaggtacctaaatctgcaccacgcataaaacaactctcaaggga-tttaagaagagcttgcgatagagaattagacta 204  Q
    ||||||||| |||||||||||| ||||||||||||| ||||  | |||||||||| ||||||||| | ||||||||||    
T  17555683 aaggtacctgaatctgcaccacacataaaacaactcgcaagaaattttaagaagaacttgcgataaaaaattagacta 17555760  T

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