View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14329_low_16 (Length: 203)
Name: NF14329_low_16
Description: NF14329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14329_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 9866522 - 9866361
Alignment:
| Q |
14 |
ttattctcccatatctaaatacatcaattacttttaccacccctgtgaaaatgattttatgtgtgaggcggtgacaatacaaagtaatagacaaattcca |
113 |
Q |
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| T |
9866522 |
ttattctcctatatctaaatacatcaattacttttaccacccctgtgaaaatgatattatatgtgaggcggtgacaatacaaaataatacacaaattcca |
9866423 |
T |
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| Q |
114 |
taagaaattagtgtggaactatttgttccaaacctagcaaacataaaataaaagactgttat |
175 |
Q |
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| T |
9866422 |
taagaaattagtgtggaactatgtgttccaaacctagcaaacataaaatgatagactgttat |
9866361 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 40959751 - 40959634
Alignment:
| Q |
47 |
ttaccacccctgtgaaaatgattttatgtgtgaggcggtgacaatacaaagtaatagacaaattccataagaaattagtgtggaactatttgttccaaac |
146 |
Q |
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| T |
40959751 |
ttaccacccctgtgaatataattttatgtttaaggcgttgataatacaacagagtatacaaattacataagaaaagagtgtagaactacgtgtgccaaac |
40959652 |
T |
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| Q |
147 |
ctagcaaacataaaataa |
164 |
Q |
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| T |
40959651 |
ctagaaagcataaaataa |
40959634 |
T |
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