View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14329_low_2 (Length: 540)
Name: NF14329_low_2
Description: NF14329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14329_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 45706374 - 45706704
Alignment:
| Q |
10 |
taattctcactacaaatacattaacagaaagaaaattattgaaagatataataatcggatcaatgttgtgctagcttcatcttcttgctgatgctgcaat |
109 |
Q |
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| T |
45706374 |
taattctcactacaaatacattaacagaaagaaaattattgaaagatataataatcggatcaatgttgtgctagcttcatcttcttgctgatgctgcaat |
45706473 |
T |
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| Q |
110 |
tatagagcgtaaaaagttgattagtgataatctaataactcatgtataattataattctcttatttactatactgatgatgaataccgcttaattaactg |
209 |
Q |
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| T |
45706474 |
tatagagcgtaaaaagttgattagtgataatctaataactcacgtataattataattctcttatttactatactgatgatgaataccgcttaattaactg |
45706573 |
T |
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| Q |
210 |
aaacaaataaacatacaagtatatgcgcaaatgaactgaactgatccattattactcggtaatctgcagttggtcatcaggttttgtgacagaccacttg |
309 |
Q |
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| T |
45706574 |
aaacaaataaacatacaagtatatgcgcaaa-----tgaactgatccattattattcggtaatctgcagttggtcatcaggttttgtgacagaccacttg |
45706668 |
T |
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| Q |
310 |
cttacacgtgacctagccttctttgcctgcacgtac |
345 |
Q |
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| T |
45706669 |
cttacacttgacctagccttctttgcctgcacgtac |
45706704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 410 - 523
Target Start/End: Original strand, 45706769 - 45706882
Alignment:
| Q |
410 |
gagttatgtgtatagttttatgttgaagtgtatatacctcattttcccaatcacatcgtgctgttactatgataagtatcaacgtttggattgctgtacc |
509 |
Q |
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| T |
45706769 |
gagttatgtgtatagttttatgttgaagtgtatatacctcattttcccaatcacatcgtgctgttactatgataagtatcaacgtttggattgctgtacc |
45706868 |
T |
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| Q |
510 |
accaaatatcattc |
523 |
Q |
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| T |
45706869 |
accaaatatcattc |
45706882 |
T |
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