View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14329_low_7 (Length: 409)
Name: NF14329_low_7
Description: NF14329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14329_low_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 14622323 - 14621942
Alignment:
| Q |
9 |
tgagatgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagc |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14622323 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaagttccaagc |
14622224 |
T |
|
| Q |
109 |
tgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622223 |
tgcggctacgctgtaatacgcacaaggaatgttgaaactcttggttatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
14622124 |
T |
|
| Q |
209 |
gttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcacctt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14622123 |
gttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcacctt |
14622024 |
T |
|
| Q |
309 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14622023 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatc |
14621942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 14588665 - 14588284
Alignment:
| Q |
9 |
tgagatgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagc |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| |
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|
| T |
14588665 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagc |
14588566 |
T |
|
| Q |
109 |
tgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
208 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14588565 |
tgcgcctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaa |
14588466 |
T |
|
| Q |
209 |
gttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcacctt |
308 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588465 |
gttttgaatatctcagtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcacctt |
14588366 |
T |
|
| Q |
309 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588365 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatc |
14588284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 12846083 - 12845949
Alignment:
| Q |
128 |
gcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
227 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||||||||| || | | | |||| |||||||||| ||||| || || |||||||||||||| |||| |
|
|
| T |
12846083 |
gcacaagggatgttcaaacttttggctattgacggtaaccattcggtagcaaaatcatagaaaacccagtcagggtttgatgttttgagtatctcagtaa |
12845984 |
T |
|
| Q |
228 |
cacggtcttggaaaccatcataagctaacttaagg |
262 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |
|
|
| T |
12845983 |
catcatcttggagaccatcataagccaacttaagg |
12845949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 11530203 - 11529826
Alignment:
| Q |
13 |
atgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgct |
112 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||| |||||| |||||||| | || | ||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
11530203 |
atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagctgga |
11530104 |
T |
|
| Q |
113 |
gctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttt |
212 |
Q |
| |
|
| | |||||||| ||||||||||| || | || ||||||||||||||||||||||| | ||| |||| ||||||||||||||| ||| || |||| |
|
|
| T |
11530103 |
acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcagactttgatgttt |
11530004 |
T |
|
| Q |
213 |
tgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtag |
312 |
Q |
| |
|
|||||||||| |||||| | |||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
11530003 |
tgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttctag |
11529904 |
T |
|
| Q |
313 |
ttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatc |
390 |
Q |
| |
|
|| |||||||| ||||| ||| |||||||||| ||||||||||| |||| || ||| ||||||||||| |||||||| |
|
|
| T |
11529903 |
ttgttctatgtggggtaagggtaattttaccaaattgatgaatggctgaattgcttttggtgttttgggaatttgatc |
11529826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 29954238 - 29953861
Alignment:
| Q |
13 |
atgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgct |
112 |
Q |
| |
|
|||||||| |||||| |||||| |||| |||||||| ||| || ||||||| | || | ||| |||||||||| | |||| | ||||||||||| |
|
|
| T |
29954238 |
atgaatggatgtttgaaaaggaacccactttggtgggctacacctatctatgttgatttgatcctttggtggatttgataaacatatgttccaagctggg |
29954139 |
T |
|
| Q |
113 |
gctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttt |
212 |
Q |
| |
|
| ||| |||||| |||||||||||||||| || || ||||| |||||||||||||| | | | |||| | ||||||||||||||||| ||||||| |
|
|
| T |
29954138 |
acaacgttgtaatgagcacaaggaatgttgaggcttttcgctattgacggtaaccaatcagctgcataatcatataaaacccaatcaggctttgaagttt |
29954039 |
T |
|
| Q |
213 |
tgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtag |
312 |
Q |
| |
|
|||||||||| |||||| |||||||| ||| |||||||| || ||||| |||||| | ||| || ||||||||||||||||| ||| |||||||||| |
|
|
| T |
29954038 |
tgagtatctcagtaacatcgtcttggagaccgtcataagccaatttaagataaccaagcatgttaaatggaacattttgagtgctctctccaccttgtag |
29953939 |
T |
|
| Q |
313 |
ttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatc |
390 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||| |
|
|
| T |
29953938 |
ttgttctatgtatggtaaaggtgattttaccaaattgatgaatggttgaattgttttgggtggtttcggaatttgatc |
29953861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 74 - 390
Target Start/End: Original strand, 51370276 - 51370592
Alignment:
| Q |
74 |
tcccttggtggattaaagaaacccaagttccaagctgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccg |
173 |
Q |
| |
|
||||| |||||||||||||||| | |||| ||||||| || ||||||| |||||||||||||| | || ||||| || | ||| |||||||| | |
|
|
| T |
51370276 |
tccctaggtggattaaagaaacatacgttcaaagctgcgagtatactgtaatgagcacaaggaatgttaaggcttttggcaattgccggcaaccaatcag |
51370375 |
T |
|
| Q |
174 |
atactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttag |
273 |
Q |
| |
|
| | |||| ||||||||||||||||||| |||||||||||||| || |||||| |||||| | ||| |||||||| |||||||| |||||| | | |
|
|
| T |
51370376 |
ctgcacaatcatagaaaacccaatcaggctttgaagttttgagtatatcagtaacattgtcttgtagaccgtcataagccaacttaagataaccaatcat |
51370475 |
T |
|
| Q |
274 |
gtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggt |
373 |
Q |
| |
|
|||| |||| ||| || |||| ||| |||||||||||| |||||| | ||||||||||||||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
51370476 |
gttttttggaatattctgcatgctctcttcaccttgtagttgttctatatgtggtaaaggtgatttaaccaaattgatgaatggttgaattgttttgggt |
51370575 |
T |
|
| Q |
374 |
gttttgggcatttgatc |
390 |
Q |
| |
|
| ||| || |||||||| |
|
|
| T |
51370576 |
ggtttaggaatttgatc |
51370592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 181 - 390
Target Start/End: Complemental strand, 20492205 - 20491996
Alignment:
| Q |
181 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaac |
280 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||| || |||||| ||||||| |||||||||||||| || ||||||| |||| | || ||| |
|
|
| T |
20492205 |
atcatagaaaacccaatcaggctttgaagttttaagtatttcagtaacatggtcttgaaaaccatcataagccaatttaaggtgaccattcttgtctaat |
20492106 |
T |
|
| Q |
281 |
ggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgg |
380 |
Q |
| |
|
||||| || ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||| |
|
|
| T |
20492105 |
ggaaccttaagagtgctctcttcaccatgtagttgttctatgtatggtaaaggtgattttaccaaattgatgaatggttgaattgctttgggtgctttgg |
20492006 |
T |
|
| Q |
381 |
gcatttgatc |
390 |
Q |
| |
|
|||||||||| |
|
|
| T |
20492005 |
gcatttgatc |
20491996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 1354383 - 1354313
Alignment:
| Q |
317 |
tctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttg |
387 |
Q |
| |
|
||||||| ||||||||| || ||||||| ||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
1354383 |
tctatgtgtggtaaaggcaatcttaccaatttgatgaatggttcaatggttttgggtgtttttggcatttg |
1354313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 1361595 - 1361556
Alignment:
| Q |
9 |
tgagatgaatggttgtttggaaaggagcccattttggtgg |
48 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1361595 |
tgagatgaatggttgtttgaaaaggaacccattttggtgg |
1361556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 1361269 - 1361199
Alignment:
| Q |
317 |
tctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttg |
387 |
Q |
| |
|
||||||| ||||||||| || ||||||| || |||||||||| || |||||||||||||| |||||||| |
|
|
| T |
1361269 |
tctatgtgtggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttg |
1361199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 1357291 - 1357250
Alignment:
| Q |
181 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctc |
222 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
1357291 |
atcatagaaaacccaatcaggatttgaagttttgagtatctc |
1357250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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