View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1432_low_1 (Length: 2912)
Name: NF1432_low_1
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1432_low_1 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 726; Significance: 0; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 18 - 861
Target Start/End: Complemental strand, 43488842 - 43487999
Alignment:
| Q |
18 |
catgtgttaggtttaataaatttggaaggagttttcctgttttgtttcaagctgaagctatgaaagagatgctgaaaaagagtaaaatggaagggagaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488842 |
catgtgttaggtttaataaatttggaaggagttttcctgttttgtttcaagctgaagctatgaaagagatgctgaaaaagagtaaaatggaagggagaag |
43488743 |
T |
|
| Q |
118 |
ggctaagtcattcaaccctagagacaaaggtggtgaaaagaaaggtggtgggcttgctagaagttcaagttgcattcctgctattacaagagatatcaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488742 |
ggctaagtcattcaaccctagagacaaaggtggtgaaaagaaaggtggtgggcttgctagaagttcaagttgcattcctgctattacaagagatatcaat |
43488643 |
T |
|
| Q |
218 |
gatttcacaatcaccaattaatcttatcttataacatagaagttaaccgtatgtttgaattgatggtaagtttaatagaatctcagtgagtcaccgtaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
43488642 |
gatttcacaatcaccaattaatcttatcttataacatagaagttaaccgtatgtttgaattgatggtaagtttaatagaatctcagcgagtcaccgtaat |
43488543 |
T |
|
| Q |
318 |
tttattcaataatattacggtaagaccaccatgatttcatcaactcaacgtgatttcagacatgcattaagtgttttaattctgtattgattaattctat |
417 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488542 |
tttattcaataatattacggtgagaccatcatgatttcatcaactcaacgtgatttcagacatgcattaagtgttttaattctgtattgattaattctat |
43488443 |
T |
|
| Q |
418 |
gttgtctagggagcatggtttgtatactcgttccnnnnnnnnnnnnnnnnnnnnnnnnnctactgactagtgactactcctcagagtctttagggtttga |
517 |
Q |
| |
|
||||| || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488442 |
gttgttta-ggagcatggtttatatactcgttccttttttttcttttcttttcttttttctactgactagtgactactcctcagagtctttagggtttga |
43488344 |
T |
|
| Q |
518 |
tcaagataacataaccctaaagtcataccttttgatccgagtataaggttttttaggtctctctcccaatcactatcatagtttttattgaaggatcaag |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43488343 |
tcaagataacataaccctaaagtcataccttttgatccgagtataaggttttttaggtctctctccctatcactatcatagtttttattgaaggatcaag |
43488244 |
T |
|
| Q |
618 |
ttgaaccgtgtgtgagttctttgtctttctttttgatggagagggtttttaatactttgta-tttagtcagtggctttttcaatgtattttagatatttc |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488243 |
ttgaaccgtgtgtgagttctttgtctttctttttgatggagagggtttttaatactttgtattttagtcagtggctttttcaatgtattttagatatttc |
43488144 |
T |
|
| Q |
717 |
caatcttataacagaaataaaatttgcttcatgcattgatctactgcttttgttggctgcctttgtctcaattcaaggttacgtaccaaacccaagagag |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488143 |
caatcttataacagaaataaaatttgcttcatgcattgatctactgcttttgttggctgcctttgtctcaattcaaggttacgtaccaaacccaagagag |
43488044 |
T |
|
| Q |
817 |
aaataccgtggcttagaagttagttgtgacctttttattaaaagg |
861 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488043 |
aaattccgtggcttagaagttagttgtgacctttttattaaaagg |
43487999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 2498 - 2886
Target Start/End: Complemental strand, 43486279 - 43485891
Alignment:
| Q |
2498 |
caatttctatataaaattaaaaatggaaaacaatctaccagtgatatcaaagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggc |
2597 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43486279 |
caatttctatataaaataaaaaatggaaaacaatctaccagtgatatcaaagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggc |
43486180 |
T |
|
| Q |
2598 |
atttcaaagggaaaactgatgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccattgccaatctaatgttccaccatcaca |
2697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43486179 |
atttcaaagggaaaactgatgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccattgccaatctaatgttccaccatcaca |
43486080 |
T |
|
| Q |
2698 |
gccacggcagctcctcctcaagccgctctcacgactcacgccaccaatttaccgcatcaagggagtatgaattcagctgcagtaacactcctcatcactt |
2797 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43486079 |
gccaccacagctcctcctcaagccgctctcacgactcacgccaccaatttaccgcatcaagggagtatgaattcagctgcagtaacactcctcatcactt |
43485980 |
T |
|
| Q |
2798 |
tttcccaatagggaaacgtcaccgcagcaacaaccacaatcataacaatttcttcacttgcgctcatatgccacctacgcaggatgatg |
2886 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
43485979 |
tttcccaatagggaaacgtcaccgcagcaacaaccacaatcacaacaatttcttcacttgcgctcatacgccacctacgcaggacgatg |
43485891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1287 - 1666
Target Start/End: Complemental strand, 43487378 - 43486997
Alignment:
| Q |
1287 |
ttcttttaattgaacaagcgacttccttttccaataatctacccacaatctctttccttgtgctagttattatggctacatata--actgcttcaattca |
1384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43487378 |
ttcttttaattgaacaagcgacttccttttccaataatctacccacaatctctt-ccttgtgctagttattatggctacatatataactgcttcaattca |
43487280 |
T |
|
| Q |
1385 |
tagaacagaagattccatttggaatctttgaaacttaaacatattatttccctcttggaataatattacatatcataccatattaaaattaatttacttg |
1484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43487279 |
tagaacagaagattccatttggaatctttgaaacttaaacatattatttccctcttggaataatattacatatcataccatataaaaattaatttacttg |
43487180 |
T |
|
| Q |
1485 |
aagatgatagtttttgttacattaaataaaaatccattaaaaacgtagacttcagagaaaaaacattgaatttgaaatgtaattgacatc-ggatagtta |
1583 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
43487179 |
aaggtgatagtttttgttacattaaataaaaatccattgaaaacgtagacttcagagaaaaaacattgaatttgaaatgtaattgtcatcaggatagtta |
43487080 |
T |
|
| Q |
1584 |
agagagttcgatataaaatagtattattatataataaaaacatcggacttcatagaaaataaataatagaacatcagaattct |
1666 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43487079 |
agagagttcgatataaaatagtattattatataataaaaacatcggacttcatagaaaataaataatagaacatcagaattct |
43486997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1949 - 2383
Target Start/End: Complemental strand, 43486833 - 43486401
Alignment:
| Q |
1949 |
ataaaacggtcgtcctcttcaccatatctcgcatacgactaattgtcataaaataattgtacaaatatgattactcttaaactatcatatctatcataaa |
2048 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43486833 |
ataagacggtcgtcctcttcaccatatctcgtatacgattagttgtcataaaataattgtacaaatatgattactcttaaactatcatatctatcataga |
43486734 |
T |
|
| Q |
2049 |
gtctctttctctcttcgtctagaggtgtatacactcacaattagagtgtaaaaacaaaat--------cattagagaaggtaaatgcattgctggctgca |
2140 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43486733 |
gtctctttctctcttggtctagaggtgtatacactgacaattagagtgtaaaaaaaaaaaaaaaaaaccattagagaaggtaaatgcattgctggctgca |
43486634 |
T |
|
| Q |
2141 |
caatatgacaattatatggcttggtggacgttcaatttcaaacatttcaaccaagtaaagcactccttttgtcgttcttcaaaagcataggcttccccca |
2240 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43486633 |
caatatgaaaattatatggcttggtggatgttcaatttcaaacatttcaaccaagtaaagcactccttttgtcgtttttcaaaagcataggcttccccca |
43486534 |
T |
|
| Q |
2241 |
aaatataacaaaatattataaagacataaagtaatacaaaatatgtatgcacccaccacgggttattctatttccatatggtggattcaatattcattta |
2340 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43486533 |
aaatat----------tataaagacataaagtaatacaaaatatgtatgcacccaccacgggttattctatttccatatggtggattcaatattcattta |
43486444 |
T |
|
| Q |
2341 |
tcattttccttcttttccccctcactatatataacctcaacac |
2383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43486443 |
tcattttccttcttttccccctcactatatataacctcaacac |
43486401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 177; E-Value: 2e-94
Query Start/End: Original strand, 2516 - 2831
Target Start/End: Complemental strand, 43475642 - 43475330
Alignment:
| Q |
2516 |
aaaaatggaaaacaatctaccagtgatatcaaagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactg |
2615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
43475642 |
aaaaatggaaaacaatctaccagtgatatcaaagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaaacta |
43475543 |
T |
|
| Q |
2616 |
atgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccattgccaatctaatgttccaccat---cacagccacggcagctcct |
2712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
43475542 |
atgatgggcctaaacatgatgctcaaacgccgcagcaagctcgccggaaaagccattgccaatctaatgttccaccatcaccacaaccacggtggctcca |
43475443 |
T |
|
| Q |
2713 |
cctcaagccgctctcacgactcacgccaccaatttaccgcatcaagggagtatgaattcagctgcagtaacactcctcatcactttttcccaatagggaa |
2812 |
Q |
| |
|
||||||||||| || ||||| ||||||||| ||||| ||||||||||| ||||||||||| || |||||||| | ||||| |||||||| ||||| |
|
|
| T |
43475442 |
cctcaagccgc-----cg-ctcacaccaccaattcaccgcctcaagggagtacgaattcagctgtagcaacactcccaaccacttcttcccaattgggaa |
43475349 |
T |
|
| Q |
2813 |
acgtcaccgcagcaacaac |
2831 |
Q |
| |
|
|||||||| ||| ||||| |
|
|
| T |
43475348 |
gcgtcaccgtagccacaac |
43475330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 166; E-Value: 7e-88
Query Start/End: Original strand, 947 - 1124
Target Start/End: Complemental strand, 43487913 - 43487736
Alignment:
| Q |
947 |
aaacaatcaaaataaaatagatagaagtataatatatgtatacatgaataaagtttgcaactgtggtggatcttcctcgagactaggaatgttagccaca |
1046 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43487913 |
aaacaatcaaaataaaatagatagaagtataatatatgtatacacgaataaaatttgcaactgtggtggatcttcctcgagactaggaatgttagccaca |
43487814 |
T |
|
| Q |
1047 |
caaattttctttttgttgttgttagttgttgaatatagcttcaaaataaatgctagccatctaaaaactaatttgatg |
1124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43487813 |
caaattttctttttgttgttgttagttgttgaatatagcttcaaaataaatgctagccatctaaaaaataatttgatg |
43487736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-32
Query Start/End: Original strand, 1211 - 1295
Target Start/End: Complemental strand, 43487646 - 43487563
Alignment:
| Q |
1211 |
gacatcttaacctcaaagctccactatagcttgaatgtttttcatttccatttcttcaaataaaagagtaatatagttcttttaa |
1295 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43487646 |
gacatcttaacctcaaagctccactata-cttgaatgtttttcatttccatttcttcaaatataagagtaatatagttcttttaa |
43487563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1736 - 1819
Target Start/End: Complemental strand, 7718819 - 7718736
Alignment:
| Q |
1736 |
gttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatc |
1819 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||| | ||||||||||| | |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
7718819 |
gttaaaagaattcgatatgcaattgaaacattcatataacaatttgcagctttgacaaactcaagaatttcaaatgttcacatc |
7718736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 1796 - 1845
Target Start/End: Complemental strand, 43486987 - 43486938
Alignment:
| Q |
1796 |
tcaagaatttcaaatgttgacatcaacgcatccttaaaatttatactaga |
1845 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43486987 |
tcaagaatttcaaatgttgacatcaacgcatccttaaaatttatattaga |
43486938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 1668 - 1822
Target Start/End: Complemental strand, 10003756 - 10003604
Alignment:
| Q |
1668 |
aagtaatttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatt |
1767 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||| | | |||||| | | ||| |||||||||||| |||||| ||| ||||||| || |
|
|
| T |
10003756 |
aagtagtttttcaatcattttaacttcgaaaaacttctttctataaatgcaacaa--tcatcggtatagttaagagaattcgataagcacttgaaacgtt |
10003659 |
T |
|
| Q |
1768 |
tagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
| ||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10003658 |
tggataacaatcggtggatttgacaaactcaagaatttcaaatgttgacatcaac |
10003604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 1732 - 1822
Target Start/End: Complemental strand, 11929163 - 11929073
Alignment:
| Q |
1732 |
catagttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||| ||||||||| | |||||||| ||| |||||||||| |||||||||| ||||| |
|
|
| T |
11929163 |
catagttaagagaattcgataagaaattgaaacatttggataacaatctacaactttgacaaattcaagaattttaaatgttgacgtcaac |
11929073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000007
Query Start/End: Original strand, 2266 - 2345
Target Start/End: Complemental strand, 43475885 - 43475809
Alignment:
| Q |
2266 |
ataaagtaatacaaaatatgtatgcacccaccacgggttattctatttccatatggtggattcaatattcatttatcatt |
2345 |
Q |
| |
|
||||||||| |||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
43475885 |
ataaagtaacacaaaacatgcatgcacccac---gggttattttatttccatatggtgtattcaatattcatttctcatt |
43475809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 1674 - 1822
Target Start/End: Complemental strand, 9044253 - 9044108
Alignment:
| Q |
1674 |
tttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatttagata |
1773 |
Q |
| |
|
|||||||||||||| || ||| |||| ||| |||||||| |||||||| | | |||||||||||||||| | | || ||||||||| |||| |||| |
|
|
| T |
9044253 |
tttttcaataagtt-aatttcaaaaatcttttttatgcagatgcaatagac--accaacatagttaagagaatccaataaacaattgaaatatttggata |
9044157 |
T |
|
| Q |
1774 |
acaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
||||||| | | ||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
9044156 |
acaatttatgattttgacaaactcaagaatttcatatgccgacatcaac |
9044108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1668 - 1711
Target Start/End: Original strand, 25643030 - 25643073
Alignment:
| Q |
1668 |
aagtaatttttcaataagtttaacttcgaaaaacttctttatgc |
1711 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
25643030 |
aagtagtttttcaataattttaacttctaaaaacttctttatgc |
25643073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 2452 - 2483
Target Start/End: Complemental strand, 43486324 - 43486293
Alignment:
| Q |
2452 |
ttcaaaatcactctcctcaaattattccaaac |
2483 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43486324 |
ttcaaaatcactctcctcaaattattccaaac |
43486293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-32
Query Start/End: Original strand, 2547 - 2671
Target Start/End: Complemental strand, 4359242 - 4359118
Alignment:
| Q |
2547 |
aagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactgatgatgggcctaaacatgatgctcaaacgcc |
2646 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||| ||| ||||||||| | ||||||| |
|
|
| T |
4359242 |
aagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaacatgatggttaaacgcc |
4359143 |
T |
|
| Q |
2647 |
gcagcaagcttgccggaaaagccat |
2671 |
Q |
| |
|
|| ||||||| |||||||||||||| |
|
|
| T |
4359142 |
gcggcaagctcgccggaaaagccat |
4359118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-31
Query Start/End: Original strand, 2517 - 2671
Target Start/End: Original strand, 4349612 - 4349766
Alignment:
| Q |
2517 |
aaaatggaaaacaatctaccagtgatatcaaagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactga |
2616 |
Q |
| |
|
|||||||||||||| ||||| | ||| | |||||||| ||||||||| ||||||| || || |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
4349612 |
aaaatggaaaacaacgtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaa |
4349711 |
T |
|
| Q |
2617 |
tgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccat |
2671 |
Q |
| |
|
|||||| ||| ||||||||| | |||| |||| ||||||| |||||||||||||| |
|
|
| T |
4349712 |
tgatggacctcaacatgatggttaaacaccgcggcaagctcgccggaaaagccat |
4349766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-31
Query Start/End: Original strand, 2517 - 2671
Target Start/End: Original strand, 4352999 - 4353152
Alignment:
| Q |
2517 |
aaaatggaaaacaatctaccagtgatatcaaagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactga |
2616 |
Q |
| |
|
|||||||||||||| ||||| | ||| | |||||||| ||||||||| ||||||| || || |||||||| |||||||| || |||||||||||||| | |
|
|
| T |
4352999 |
aaaatggaaaacaacgtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggtatatcaaagggaaaactaa |
4353098 |
T |
|
| Q |
2617 |
tgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccat |
2671 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
4353099 |
tgatggacctcaacatgatggtcaaacgccgtag-aagcttgccggaaaagccat |
4353152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 4346530 - 4346625
Alignment:
| Q |
18 |
catgtgttaggtttaataaatttggaaggagttttcctgttttgtttcaagctgaagctatgaaagagatgctgaaaaagagtaaaatggaaggga |
113 |
Q |
| |
|
||||||||| |||||| |||| ||| ||| |||||| |||||||||||||| ||||||||||||| ||| ||||||||||||| ||||| |||| |
|
|
| T |
4346530 |
catgtgttaagtttaacaaatatggtagggcttttccagttttgtttcaagcacaagctatgaaagaaatgttgaaaaagagtaacatggatggga |
4346625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 1755 - 1822
Target Start/End: Original strand, 10873382 - 10873449
Alignment:
| Q |
1755 |
caattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||| |||||||| | ||| |||||||||||||||| |
|
|
| T |
10873382 |
caattgaaacatttggataacaatatgcgactttgacaaactcaaaattttaaaatgttgacatcaac |
10873449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 1763 - 1822
Target Start/End: Original strand, 11623692 - 11623751
Alignment:
| Q |
1763 |
acatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
|||||| ||||||||| || | |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11623692 |
acatttggataacaatatgcacctttgacaaactgaagaatttcaaatgttgacatcaac |
11623751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-19
Query Start/End: Original strand, 1732 - 1818
Target Start/End: Complemental strand, 24914581 - 24914495
Alignment:
| Q |
1732 |
catagttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacat |
1818 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24914581 |
catagttaagagaattcaataagcaattgaaacattcgaataacaatttgtggctttgataaactcaagaatttcaaatgttgacat |
24914495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 1754 - 1818
Target Start/End: Original strand, 25361721 - 25361785
Alignment:
| Q |
1754 |
gcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacat |
1818 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
25361721 |
gcaattgaaacattcgaataacaatttgtggctttgataaactcaagaatttcaaatgctgacat |
25361785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 1769 - 1822
Target Start/End: Complemental strand, 21014782 - 21014729
Alignment:
| Q |
1769 |
agataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
||||||||| ||| | |||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
21014782 |
agataacaaattgcagctttgacaaactcaagaatttcaaatgctgacatcaac |
21014729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1668 - 1707
Target Start/End: Complemental strand, 24914643 - 24914604
Alignment:
| Q |
1668 |
aagtaatttttcaataagtttaacttcgaaaaacttcttt |
1707 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
24914643 |
aagtaatttttgaataactttaacttcgaaaaacttcttt |
24914604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-18
Query Start/End: Original strand, 1674 - 1810
Target Start/End: Complemental strand, 44680286 - 44680152
Alignment:
| Q |
1674 |
tttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatttagata |
1773 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||| |||||| || ||||||||||| |||||| | |||||| ||||| ||| |||| |||| |
|
|
| T |
44680286 |
tttttgaataattttaacttcgaaaaacttctttatgcaaatgcaacat--ttatcaacatatttaagaaaattcgataagcaatcaaaatatttggata |
44680189 |
T |
|
| Q |
1774 |
acaatttgtaactttgataaactcaagaatttcaaat |
1810 |
Q |
| |
|
||||| | | |||||| |||||||||||| |||||| |
|
|
| T |
44680188 |
acaatatatgcctttgacaaactcaagaatgtcaaat |
44680152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 1721 - 1804
Target Start/End: Original strand, 687359 - 687442
Alignment:
| Q |
1721 |
atagttatcaacatagttaagagagttcgatgtgcaattgaaacatttagataacaatttgtaactttgataaactcaagaatt |
1804 |
Q |
| |
|
||||| ||| |||||||||||||| |||||| || ||||||||||||| |||| ||| |||| |||||| ||||||||||||| |
|
|
| T |
687359 |
atagtcatcgacatagttaagagaattcgatatggaattgaaacatttgcataaaaatctgtagctttgacaaactcaagaatt |
687442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 33; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1672 - 1811
Target Start/End: Original strand, 25770 - 25907
Alignment:
| Q |
1672 |
aatttttcaataagtttaacttcgaaaaacttctttatgcacatgcaatatagttatcaacatagttaagagagttcgatgtgcaattgaaacatttaga |
1771 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | || |||| ||||| ||| | | ||||| || |||||| |||| ||||||||| ||| |
|
|
| T |
25770 |
aatttttcaataattttaacttcgaaaaacttctttctacagatgc--catagtcatcggcgcaattaagtgaattcgataagcaactgaaacattcaga |
25867 |
T |
|
| Q |
1772 |
taacaatttgtaactttgataaactcaagaatttcaaatg |
1811 |
Q |
| |
|
||||||| || || ||| || ||||||||||||||||| |
|
|
| T |
25868 |
taacaatgtgcggctatgagaagctcaagaatttcaaatg |
25907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1671 - 1707
Target Start/End: Original strand, 3495335 - 3495371
Alignment:
| Q |
1671 |
taatttttcaataagtttaacttcgaaaaacttcttt |
1707 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3495335 |
taatttttcaataattttaacttcgaaaaacttcttt |
3495371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1754 - 1822
Target Start/End: Complemental strand, 36353124 - 36353056
Alignment:
| Q |
1754 |
gcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaatgttgacatcaac |
1822 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
36353124 |
gcaattgaaacatttaaatatcaatttgcggttttgacaaactcaagaatttcaaatgctaacatcaac |
36353056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1754 - 1809
Target Start/End: Original strand, 39305467 - 39305522
Alignment:
| Q |
1754 |
gcaattgaaacatttagataacaatttgtaactttgataaactcaagaatttcaaa |
1809 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
39305467 |
gcaattgaaacatttggataacaatatgcggctttgataaacacaagaatttcaaa |
39305522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1668 - 1707
Target Start/End: Complemental strand, 44112071 - 44112032
Alignment:
| Q |
1668 |
aagtaatttttcaataagtttaacttcgaaaaacttcttt |
1707 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
44112071 |
aagtagtttttcaataattttaacttcgaaaaacttcttt |
44112032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1672 - 1707
Target Start/End: Complemental strand, 48050724 - 48050689
Alignment:
| Q |
1672 |
aatttttcaataagtttaacttcgaaaaacttcttt |
1707 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48050724 |
aatttttcaataattttaacttcgaaaaacttcttt |
48050689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1671 - 1721
Target Start/End: Original strand, 48951056 - 48951106
Alignment:
| Q |
1671 |
taatttttcaataagtttaacttcgaaaaacttctttatgcacatgcaata |
1721 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||| |||| |||||||| |
|
|
| T |
48951056 |
taatttttcaataattttaattttgaaaaacttctttctgcagatgcaata |
48951106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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