View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1432_low_10 (Length: 281)

Name: NF1432_low_10
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1432_low_10
NF1432_low_10
[»] chr3 (7 HSPs)
chr3 (18-271)||(14602233-14602486)
chr3 (135-216)||(40817862-40817943)
chr3 (18-71)||(36093501-36093554)
chr3 (18-71)||(26949493-26949546)
chr3 (79-133)||(36006660-36006710)
chr3 (80-134)||(40793810-40793860)
chr3 (79-133)||(53521896-53521946)
[»] chr5 (6 HSPs)
chr5 (79-216)||(21267585-21267722)
chr5 (32-174)||(21267327-21267469)
chr5 (135-216)||(21267894-21267975)
chr5 (18-71)||(32673245-32673298)
chr5 (19-64)||(21267342-21267387)
chr5 (97-133)||(38937511-38937547)
[»] chr7 (4 HSPs)
chr7 (79-212)||(23096511-23096641)
chr7 (135-216)||(23096285-23096365)
chr7 (18-71)||(7891736-7891789)
chr7 (18-71)||(22004960-22005013)
[»] chr6 (1 HSPs)
chr6 (135-216)||(440847-440928)
[»] chr4 (5 HSPs)
chr4 (135-216)||(23707296-23707377)
chr4 (135-216)||(55466340-55466421)
chr4 (18-71)||(41861567-41861620)
chr4 (177-216)||(23707551-23707590)
chr4 (79-133)||(26603579-26603629)
[»] chr2 (3 HSPs)
chr2 (18-71)||(26453889-26453942)
chr2 (18-71)||(13906262-13906315)
chr2 (18-71)||(40603725-40603778)
[»] scaffold0121 (1 HSPs)
scaffold0121 (18-71)||(41775-41828)
[»] chr8 (1 HSPs)
chr8 (18-71)||(14996173-14996226)
[»] chr1 (2 HSPs)
chr1 (18-71)||(2046942-2046995)
chr1 (18-71)||(35596638-35596691)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 14602233 - 14602486
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactcctannnnnnngaacaaaacaaatcgttttcttttagataatctttattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||| |||||||||||||||    
T  14602233 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactcctatttttttgaacaaaacaaatagttttctttcagataatctttattt 14602332  T
Q  118 caacactttatttcttgctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  14602333 caacactttatttcttgctccagtttttgtcggttcttccataccgaatctatccatcgcaggtgtttcaggttaggtttctatgctttgttacgtattt 14602432  T
Q  218 tgttgttgctatttgtgtgtgttaatttcatctctcattccctctctttctctg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14602433 tgttgttgctatttgtgtgtgttaatttcatctctcattccctctctttctctg 14602486  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 40817862 - 40817943
Alignment:
Q  135 ctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    ||||| |||||||| ||||||||||||| |||||||||||  |||||||| |||||||||||| ||||||||||||| ||||    
T  40817862 ctccaatttttgtccgttcttccataccgaatctatccatggcaggtgctccaggttaggtttttatgctttgttacttatt 40817943  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 36093554 - 36093501
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  36093554 cttttgaatgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 36093501  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26949493 - 26949546
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  26949493 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 26949546  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 36006710 - 36006660
Alignment:
Q  79 gaacaaaacaaatcgttttcttttagataatctttatttcaacactttatttctt 133  Q
    ||||||||||||||| ||||    |||||||||||||||||||||||||| ||||    
T  36006710 gaacaaaacaaatcgctttc----agataatctttatttcaacactttatctctt 36006660  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 40793860 - 40793810
Alignment:
Q  80 aacaaaacaaatcgttttcttttagataatctttatttcaacactttatttcttg 134  Q
    ||||||||||||||    ||||||| ||||||||||||||||| |||||||||||    
T  40793860 aacaaaacaaatcg----cttttagttaatctttatttcaacattttatttcttg 40793810  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 53521946 - 53521896
Alignment:
Q  79 gaacaaaacaaatcgttttcttttagataatctttatttcaacactttatttctt 133  Q
    ||||||||||||||| ||||    |||||||||||||||||||||||||| ||||    
T  53521946 gaacaaaacaaatcgctttc----agataatctttatttcaacactttatctctt 53521896  T

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Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 21267585 - 21267722
Alignment:
Q  79 gaacaaaacaaatcgttttcttttagataatctttatttcaacactttatttcttgctccagtttttgtcggttcttccataccaaatctatccatccca 178  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||    
T  21267585 gaacaaaacaaatcgctttctttcacataatctttatttcaacactttatttcttgctccagtttttgttcgttcttccataccgaatctatccatcgca 21267684  T
Q  179 ggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  21267685 ggtgcttcaggtttggtttctatgctttgttacgtatt 21267722  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 21267327 - 21267469
Alignment:
Q  32 aaatccctcatatttttctgaacaaaacaaatcactcctannnnnnngaacaaaacaaatcgttttcttttagataatctttatttcaacactttatttc 131  Q
    ||||||||| ||||||| ||||||||||||||||||| ||       ||||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  21267327 aaatccctcctatttttttgaacaaaacaaatcactcatatttttttgaacaaaacaaatcgctttctttcacataatctttatttcaacactttatttc 21267426  T
Q  132 ttgctccagtttttgtcggttcttccataccaaatctatccat 174  Q
    |||||||||||||||   ||||||||||||| |||||||||||    
T  21267427 ttgctccagtttttgatcgttcttccataccgaatctatccat 21267469  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 21267894 - 21267975
Alignment:
Q  135 ctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    |||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  21267894 ctccagtttttgtctgttcttccataccgaatctatccattgcaggtgcttcaggttaggtttctatgctttgttacttatt 21267975  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 32673245 - 32673298
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  32673245 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 32673298  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 21267342 - 21267387
Alignment:
Q  19 ttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatc 64  Q
    |||||||  ||||||||| ||||||||||| |||||||||||||||    
T  21267342 ttttgaacaaaacaaatcactcatatttttttgaacaaaacaaatc 21267387  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 38937547 - 38937511
Alignment:
Q  97 tcttttagataatctttatttcaacactttatttctt 133  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  38937547 tctttcagataatctttatttcaacactttatctctt 38937511  T

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Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 23096641 - 23096511
Alignment:
Q  79 gaacaaaacaaatcgttttcttttagataatctttatttcaacactttatttcttgctccagtttttgtcggttcttccataccaaatctatccatccca 178  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||   |||||||||||| ||    
T  23096641 gaacaaagcaaatcgctttcttgtagataatctttatttcaacactttatttcttgatcaagtttttgtc-gttcttccata--gaatctatccatcgca 23096545  T
Q  179 ggtgcttcaggttaggtttctatgctttgttacg 212  Q
    ||||||||||||| | ||||||||||||||||||    
T  23096544 ggtgcttcaggtttgatttctatgctttgttacg 23096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 23096365 - 23096285
Alignment:
Q  135 ctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    |||||||||||||| ||||||||||||| |||||||||||  ||||||||| |||||| |||||||||||||||||| ||||    
T  23096365 ctccagtttttgtccgttcttccataccgaatctatccatggcaggtgctttaggtta-gtttctatgctttgttacttatt 23096285  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7891736 - 7891789
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  7891736 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 7891789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 22004960 - 22005013
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  22004960 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 22005013  T

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Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 440847 - 440928
Alignment:
Q  135 ctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    |||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||    
T  440847 ctccagtttttgtctgttcttccataccgaatctattcatcgcaggtgcttcaggttaggtttctatgctttgttacttatt 440928  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 23707377 - 23707296
Alignment:
Q  135 ctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    |||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||| ||||||||||||| ||||    
T  23707377 ctccagtttttgtccgttcttccataccaaatctatcgattgcaggtgcttcaggttaggtttttatgctttgttacttatt 23707296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 55466340 - 55466421
Alignment:
Q  135 ctccagtttttgtcggttcttccataccaaatctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    |||||||||||||| |||||| |||||| ||||| |||||| ||| |||||||||||||||||||||| |||||| ||||||    
T  55466340 ctccagtttttgtccgttctttcataccgaatctctccatcgcagttgcttcaggttaggtttctatgttttgtttcgtatt 55466421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41861620 - 41861567
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  41861620 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 41861567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 23707590 - 23707551
Alignment:
Q  177 caggtgcttcaggttaggtttctatgctttgttacgtatt 216  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  23707590 caggtgcttcaggtttggtttctatgctttgttacgtatt 23707551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 26603629 - 26603579
Alignment:
Q  79 gaacaaaacaaatcgttttcttttagataatctttatttcaacactttatttctt 133  Q
    ||||||||||||||| ||||    |||||||||||||||||||||||||| ||||    
T  26603629 gaacaaaacaaatcgctttc----agataatctttatttcaacactttatctctt 26603579  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26453889 - 26453942
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  26453889 cttttgaacgaaacaaatccctcctatttttttgaacaaaacaaatcactccta 26453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 13906262 - 13906315
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  13906262 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 13906315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 40603725 - 40603778
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  40603725 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 40603778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 41775 - 41828
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  41775 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 41828  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14996226 - 14996173
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  14996226 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 14996173  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 2046995 - 2046942
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  2046995 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 2046942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 35596691 - 35596638
Alignment:
Q  18 cttttgaatgaaacaaatccctcatatttttctgaacaaaacaaatcactccta 71  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||||||||||    
T  35596691 cttttgaacgaaacaaatccctcctattcttttgaacaaaacaaatcactccta 35596638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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