View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1432_low_13 (Length: 242)
Name: NF1432_low_13
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1432_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 43668018 - 43667781
Alignment:
| Q |
5 |
atgaagaaccgcgatagctattggaccagtaatctaatattcattatttattctataaatggtcattgtagataaaaattagttaatttattgttggtgg |
104 |
Q |
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| T |
43668018 |
atgaagaaccgcgatagctattggaccagtaatctaatattcattatttattctataaatggtcattgtagataaaaattagttaatttattgttggtgg |
43667919 |
T |
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| Q |
105 |
ataaaagttaaccactgccactacccatttggctctacattcaaaagtgatgaattaattaattaaggcaacatatatattataaaaaattgacaaagaa |
204 |
Q |
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| T |
43667918 |
ataaaaggtaaccactgccactacccatttggctctacattcaaaagtgatgaattaattaattaaggcaacatatatattataaaaaattgacaaagaa |
43667819 |
T |
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| Q |
205 |
attctttacttaactaattattaaaagatcgaatatac |
242 |
Q |
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| T |
43667818 |
attctttacttaactaattattaaaagatcgaatatac |
43667781 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 18238181 - 18238097
Alignment:
| Q |
78 |
aaaaattagttaatttattg-ttggtggataaaagttaaccactgccactacccatttggctct--acattcaaaagtgatgaat |
159 |
Q |
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| T |
18238181 |
aaaaattagttaatttatttcttggtggataaaaggtaaccatatctactccccatttggctctacacattcaaaagtcatgaat |
18238097 |
T |
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