View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1432_low_18 (Length: 212)

Name: NF1432_low_18
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1432_low_18
NF1432_low_18
[»] chr3 (11 HSPs)
chr3 (20-204)||(22837295-22837476)
chr3 (16-204)||(22825352-22825539)
chr3 (25-204)||(22823583-22823761)
chr3 (53-204)||(22821799-22821950)
chr3 (25-145)||(22792959-22793078)
chr3 (25-179)||(22794681-22794834)
chr3 (75-204)||(22827120-22827249)
chr3 (110-204)||(22814746-22814840)
chr3 (53-179)||(22796444-22796570)
chr3 (53-179)||(22784997-22785123)
chr3 (53-179)||(22789361-22789487)
[»] chr8 (3 HSPs)
chr8 (53-204)||(5615949-5616100)
chr8 (53-179)||(5621385-5621511)
chr8 (53-179)||(5612404-5612530)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 22837476 - 22837295
Alignment:
Q  20 tgaaagtacaacctaggtagaccaagcctaatcaatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgac 119  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |    
T  22837476 tgaaagtacaacctaggtagatcaaccctaattaatctaacaaaacaagccctcttcacaggcgcatcccagtgtatctgcgtacaaactatggcatggc 22837377  T
Q  120 ttcatagaagagtaggaagatttcataaatagccccattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 204  Q
    ||| |||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22837376 ttcgtagaagagt---aagatttcataaatagccctattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 22837295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 22825539 - 22825352
Alignment:
Q  16 atcttgaaagtacaacctaggtagaccaagcctaatcaatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggca 115  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||| ||||||||    
T  22825539 atctttaaggtacaacctaggtag-ccaaccctaatcaatctaacaaaacaagccctcttcacgggcgcatcctagcatatctgtgtacaacctatggca 22825441  T
Q  116 tgacttcatagaagagtaggaagatttcataaatagccccattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 204  Q
    |  ||||||||||||||| ||||||||||| | || | |  ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  22825440 tagcttcatagaagagtaagaagatttcatcagtaactctcttatgcttctgcttccaaacgtagatatattgagagagaaatgatgat 22825352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 22823761 - 22823583
Alignment:
Q  25 gtacaacctaggtagaccaagcctaatcaatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcat 124  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||| |||||||||  ||||||    
T  22823761 gtacaacctaggtag-ccaaccctaatcaatctaacaaaacaagccctcttcacgggcgcatcctagcatatctgtgtacaacctatggcatagcttcat 22823663  T
Q  125 agaagagtaggaagatttcataaatagccccattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 204  Q
    ||||||||| ||||||||||| | || | |  ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  22823662 agaagagtaagaagatttcatcagtaactctcttatgcttctgcttccaaacgtagatatattgagagagaaatgatgat 22823583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 22821950 - 22821799
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||| || |||||| |||||||||  ||||||||||||||| ||||||||||| | || |    
T  22821950 aatctaacaaaacaagccctcttcacgggcgcatcctagcatatttgtgtacaacctatggcatagcttcatagaagagtaagaagatttcatcagtaac 22821851  T
Q  153 cccattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 204  Q
     |  ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  22821850 tctcttatgcttctgcttccaaacgtagatatattgagagagaaatgatgat 22821799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 22793078 - 22792959
Alignment:
Q  25 gtacaacctaggtagaccaagcctaatcaatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcat 124  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||| || ||| || |||||| |||||||||| ||||||    
T  22793078 gtacaacctaggtag-ccaaccctagtcaatctaacaaaacaagccctcttcacgggcgcatccctgcatatatgtgtacaacctatggcatggcttcat 22792980  T
Q  125 agaagagtaggaagatttcat 145  Q
    ||||||||| |||||||||||    
T  22792979 agaagagtaagaagatttcat 22792959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 22794834 - 22794681
Alignment:
Q  25 gtacaacctaggtagaccaagcctaatcaatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcat 124  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||| || ||| || |||||| |||||||||  ||||||    
T  22794834 gtacaacctaggtag-ccaaccctagtcaatctaacaaaacaagccctcttcacgggcgcatccctgcatatatgtgtacaacctatggcatagcttcat 22794736  T
Q  125 agaagagtaggaagatttcataaatagccccattatgcttctgcttccaaacgta 179  Q
    ||||||||| |||||||||||   || | |  ||||||||||||||||| |||||    
T  22794735 agaagagtaagaagatttcatctgtaactctcttatgcttctgcttccatacgta 22794681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 22827249 - 22827120
Alignment:
Q  75 tcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagccccattatgcttctgcttccaa 174  Q
    |||||||||||||| ||| |||||| |||||| |||||||||  ||||||||||||||| ||||||||||| | || | |  ||||||||||||||||||    
T  22827249 tcacgggcgcatcctagcatatctgtgtacaacctatggcatagcttcatagaagagtaagaagatttcatcagtaactctcttatgcttctgcttccaa 22827150  T
Q  175 acgtagatagattgagagagacatgatgat 204  Q
    || |||||| ||||||||||| ||||||||    
T  22827149 acttagatatattgagagagaaatgatgat 22827120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 22814840 - 22814746
Alignment:
Q  110 atggcatgacttcatagaagagtaggaagatttcataaatagccccattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 204  Q
    |||||||| | ||||||||||||| ||||||||||| ||||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22814840 atggcatggcatcatagaagagtaagaagatttcatcaatagccctcttatgcttctgcttccaaacaaagatagattgagagagacatgatgat 22814746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 22796570 - 22796444
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    |||||||||||||||||| || ||| |||||||||||||| |||||| |||||| |||||||||  | ||||||||||||| ||||||||||| | || |    
T  22796570 aatctaacaaaacaagccttcttcatgggcgcatcccagcatatctgtgtacaacctatggcatagcctcatagaagagtaagaagatttcatcagtaac 22796471  T
Q  153 cccattatgcttctgcttccaaacgta 179  Q
     |  ||||||||||||||||| |||||    
T  22796470 tctcttatgcttctgcttccatacgta 22796444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 22785123 - 22784997
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    ||||||||||||||| ||||| | |||||| ||||| | | |||||| ||| || |||||||||  |||||||||||| || ||||||||||| | || |    
T  22785123 aatctaacaaaacaatccctctttacgggcacatccaaacatatctgtgtagaacctatggcatagcttcatagaagaataagaagatttcatcagtaac 22785024  T
Q  153 cccattatgcttctgcttccaaacgta 179  Q
        |||||||||||||||||||||||    
T  22785023 tatcttatgcttctgcttccaaacgta 22784997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 22789487 - 22789361
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    ||||||||||||||| ||||| | |||||| ||||| | | |||||| ||| || |||||||||  |||||||||||| || ||||||||||| | || |    
T  22789487 aatctaacaaaacaatccctctttacgggcacatccaaacatatctgtgtagaacctatggcatagcttcatagaagaataagaagatttcatcagtaac 22789388  T
Q  153 cccattatgcttctgcttccaaacgta 179  Q
        |||||||||||||||||||||||    
T  22789387 tatcttatgcttctgcttccaaacgta 22789361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 5615949 - 5616100
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||| || |||||| |||||||||  ||||||||||||||| ||||||||||| | || |    
T  5615949 aatctaacaaaacaagccctcttcacgggcgcatcctagcatatttgtgtacaacctatggcatagcttcatagaagagtaagaagatttcatcagtaac 5616048  T
Q  153 cccattatgcttctgcttccaaacgtagatagattgagagagacatgatgat 204  Q
     |  ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  5616049 tctcttatgcttctgcttccaaacgtagatatattgagagagaaatgatgat 5616100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 5621385 - 5621511
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    |||||||||||||||||| || ||| |||||||||||||| |||||| |||||| |||||||||  | ||||||||||||| ||||||||||| | || |    
T  5621385 aatctaacaaaacaagccttcttcatgggcgcatcccagcatatctgtgtacaacctatggcatagcctcatagaagagtaagaagatttcatcagtaac 5621484  T
Q  153 cccattatgcttctgcttccaaacgta 179  Q
     |  ||||||||||||||||| |||||    
T  5621485 tctcttatgcttctgcttccatacgta 5621511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 5612404 - 5612530
Alignment:
Q  53 aatctaacaaaacaagccctcctcacgggcgcatcccagcgtatctgcgtacaaactatggcatgacttcatagaagagtaggaagatttcataaatagc 152  Q
    ||||||||||||||| ||||| | |||||| ||||| | | |||||| ||| || |||||||||  |||||||||||| || ||||||||||| | || |    
T  5612404 aatctaacaaaacaatccctctttacgggcacatccaaacatatctgtgtagaacctatggcatagcttcatagaagaataagaagatttcatcagtaac 5612503  T
Q  153 cccattatgcttctgcttccaaacgta 179  Q
        |||||||||||||||||||||||    
T  5612504 tatcttatgcttctgcttccaaacgta 5612530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University