View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1432_low_3 (Length: 428)
Name: NF1432_low_3
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1432_low_3 |
 | |
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| [»] scaffold0458 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 39450197 - 39450600
Alignment:
| Q |
11 |
acaatatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39450197 |
acaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggaga |
39450296 |
T |
|
| Q |
111 |
aaactacttcaaacaaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacg |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39450297 |
aaactacttcaaactaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacg |
39450396 |
T |
|
| Q |
211 |
ccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtatgtatctatacccaaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39450397 |
ccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtacgtatctatacccaaaaa |
39450496 |
T |
|
| Q |
311 |
caaaaagtacttgatgattgttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggctaca |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39450497 |
caaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggctaca |
39450596 |
T |
|
| Q |
411 |
tttg |
414 |
Q |
| |
|
|||| |
|
|
| T |
39450597 |
tttg |
39450600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 39471069 - 39471472
Alignment:
| Q |
11 |
acaatatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39471069 |
acaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggaga |
39471168 |
T |
|
| Q |
111 |
aaactacttcaaacaaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacg |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39471169 |
aaactacttcaaactaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacg |
39471268 |
T |
|
| Q |
211 |
ccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtatgtatctatacccaaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
39471269 |
ccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtacgtatctatacccaaaaa |
39471368 |
T |
|
| Q |
311 |
caaaaagtacttgatgattgttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggctaca |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39471369 |
caaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggctaca |
39471468 |
T |
|
| Q |
411 |
tttg |
414 |
Q |
| |
|
|||| |
|
|
| T |
39471469 |
tttg |
39471472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 24 - 403
Target Start/End: Complemental strand, 24062049 - 24061676
Alignment:
| Q |
24 |
catttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggagaaaactacttcaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
24062049 |
catttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgcgctatttatgattcagctagacgccatgggagaaaactacttcaaa |
24061950 |
T |
|
| Q |
124 |
caaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgc |
223 |
Q |
| |
|
| || ||||||||| || |||| |||||| |||| ||||||||||||||||||||||||||||| ||| | |||||||| || |||||||||| |
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|
| T |
24061949 |
ccgat------gaagatagtattttggtaagtgatattgttgttgttagtcaagatggaagtggaaacttcaccactatcaatgatgcaatagctgctgc |
24061856 |
T |
|
| Q |
224 |
accaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtatgtatctatacccaaaaacaaaaagtacttg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24061855 |
accaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtacgtatctatacccaaaaacaaaaagtacttg |
24061756 |
T |
|
| Q |
324 |
atgattgttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattc |
403 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24061755 |
atgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattc |
24061676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 308 - 414
Target Start/End: Original strand, 39459881 - 39459987
Alignment:
| Q |
308 |
aaacaaaaagtacttgatgattgttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggct |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39459881 |
aaacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggct |
39459980 |
T |
|
| Q |
408 |
acatttg |
414 |
Q |
| |
|
||||||| |
|
|
| T |
39459981 |
acatttg |
39459987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 3424 - 3021
Alignment:
| Q |
11 |
acaatatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3424 |
acaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctagacgcaatgggaga |
3325 |
T |
|
| Q |
111 |
aaactacttcaaacaaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacg |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3324 |
aaactacttcaaactaatactaatgaagatagtgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacg |
3225 |
T |
|
| Q |
211 |
ccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtatgtatctatacccaaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3224 |
ccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatttatcaccaaaggtgtgtatcaagagtacgtatctatacccaaaaa |
3125 |
T |
|
| Q |
311 |
caaaaagtacttgatgattgttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggctaca |
410 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3124 |
caaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggctaca |
3025 |
T |
|
| Q |
411 |
tttg |
414 |
Q |
| |
|
|||| |
|
|
| T |
3024 |
tttg |
3021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 13168 - 13062
Alignment:
| Q |
308 |
aaacaaaaagtacttgatgattgttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggct |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13168 |
aaacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggct |
13069 |
T |
|
| Q |
408 |
acatttg |
414 |
Q |
| |
|
||||||| |
|
|
| T |
13068 |
acatttg |
13062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 414
Target Start/End: Complemental strand, 44476158 - 44475910
Alignment:
| Q |
166 |
ttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgctagtgatggatacttcttcatatt |
265 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||| ||||| || || | ||||||||||||||||||||||||| ||| ||||| | || || |
|
|
| T |
44476158 |
ttgttaatcaagatggaagtggaaattttacaacaattaatgatgctataaacgttgcaccaaataacacggttgctagtagtggttactttctgatttt |
44476059 |
T |
|
| Q |
266 |
tatcaccaaaggtgtgtatcaagagtatgtatctatacccaaaaacaaaaagtacttgatgattgttggagagggaatcaatcaaacagttatcacagga |
365 |
Q |
| |
|
| | ||| | ||| | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || || |||| ||| ||||||| || |
|
|
| T |
44476058 |
tgttaccgagggtatttatcaagagtatgtatctatacccaaaaacaagaagtacttgatgatggttggagatgggattaatcgaacgattatcactggt |
44475959 |
T |
|
| Q |
366 |
gaccacaatgttgttgatggtttcacaacattcaattcggctacatttg |
414 |
Q |
| |
|
|| || |||||| ||||||||| ||||| |||||||| || ||||||| |
|
|
| T |
44475958 |
gatcataatgttattgatggttctacaacgttcaattcagcaacatttg |
44475910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 44489346 - 44489271
Alignment:
| Q |
160 |
ttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacac |
235 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| | |||||||| || || |||||||| ||||||||||| |
|
|
| T |
44489346 |
ttgttgttgttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataacac |
44489271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 44464981 - 44464871
Alignment:
| Q |
143 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
242 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
|
|
| T |
44464981 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
44464882 |
T |
|
| Q |
243 |
agtgatggata |
253 |
Q |
| |
|
||||||||||| |
|
|
| T |
44464881 |
agtgatggata |
44464871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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