View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1432_low_6 (Length: 372)
Name: NF1432_low_6
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1432_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 3670712 - 3670517
Alignment:
| Q |
14 |
tataatatacacaaaagcatgcatgataagtggaaaatagatcctctagagtcatcaaatcggtgtaacaagatctcgaccgttggattgagttgcacct |
113 |
Q |
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| T |
3670712 |
tataatatacacaaaagcatgcatgataagtggaaaatagatcctctagagtcatcaaatcggtgtagcaagatctcgaccgttggattgagttgcacct |
3670613 |
T |
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| Q |
114 |
caaatccaatggttcaaaattttatgcaccgaccggaggactacaaaggatccaagctaacgagtaacgttctaattccaaattaaatgttcttca |
209 |
Q |
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| T |
3670612 |
caaatccaatggttcgaaattttatgcaccaactggaggactacagaggatccaagctgacgagtaacgttctaattccaaattaaatgttcttca |
3670517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 213 - 363
Target Start/End: Complemental strand, 3670481 - 3670328
Alignment:
| Q |
213 |
gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttttagaattcatca---tgtccagctgaaaatgttcttgattttcagaag |
309 |
Q |
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| T |
3670481 |
gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttctagaattcatcaacatgtccagctgaaaatgttcttgattttcagaag |
3670382 |
T |
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| Q |
310 |
ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataat |
363 |
Q |
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| T |
3670381 |
ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataat |
3670328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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