View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1432_low_8 (Length: 356)
Name: NF1432_low_8
Description: NF1432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1432_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 340
Target Start/End: Complemental strand, 24183861 - 24183547
Alignment:
| Q |
25 |
aacatcaaagaaaaccaatcctaaaccaatgcaccagatttccactttagatagaacaaacctgcaaaacatcagagaaaaccaccccaaaaagaaaatt |
124 |
Q |
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| T |
24183861 |
aacatcaaagaaaaccaatcctaaaccaatgcaccagatttccactttagatagaacaaacctacaaaacatcagagaaaaccaccccaaaaataaaatt |
24183762 |
T |
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| Q |
125 |
gactagatcaatgaagtaaaagaaaccaaccaatcaaaaccctaattacgagcattaagaatccttccaatctcaaatgaaacaaaagcatcaatacatg |
224 |
Q |
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| T |
24183761 |
aactagatcaatgaagtaagagaaaccaaccaatcaaa-ccctagttacgagcattaagaatccttccaatctcaaatgaaacaaaagcatcaatacatg |
24183663 |
T |
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| Q |
225 |
catactgaacttgctgaggagtaagcctaaaactattccacctgctcatagtaatcttccttggtttctcaagatccttcccaggaacacttaaagccaa |
324 |
Q |
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| T |
24183662 |
catactgaacttgctgaggagtaagcctaaaactattccacctgctcatagtaatcttccttggtttctcaagatccttcccaagaacacttaaagccaa |
24183563 |
T |
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| Q |
325 |
tgctttgagtccacca |
340 |
Q |
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| T |
24183562 |
tgctttgagtccacca |
24183547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 24183904 - 24183845
Alignment:
| Q |
49 |
accaatgcaccagatttccactttagatagaacaaacctgcaaaacatcagagaaaacca |
108 |
Q |
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| T |
24183904 |
accaatgcaccagatttccattctagacagcacaaacctacagaacatcaaagaaaacca |
24183845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 51947378 - 51947320
Alignment:
| Q |
181 |
aagaatccttccaatctcaaatgaaacaaaagcatcaatacatgcatactgaacttgct |
239 |
Q |
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||||| |||||||| |||||| || | ||||||||||| ||||||||| |||||||||| |
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| T |
51947378 |
aagaagccttccaacctcaaacgagataaaagcatcaacacatgcatattgaacttgct |
51947320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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