View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14330_low_2 (Length: 283)
Name: NF14330_low_2
Description: NF14330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14330_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 59 - 266
Target Start/End: Complemental strand, 26532906 - 26532688
Alignment:
| Q |
59 |
aacccaaaaatcaaaatacaaactttg-----------ttcccaccttcaatgtggccagcatggaaaaaatcaacttcatctcctttctcttgttcctc |
147 |
Q |
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| T |
26532906 |
aacccaaaaatcaaaatacaaactttgttccaacccatttcccaccttcaatgtggccaccatggaaaaaatcaacttcatctcctttctcttgttcctc |
26532807 |
T |
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| Q |
148 |
tttcaaagacattcaaaccctcttctcagaagaacccaccacaatcaacaaacccagaaaaacctctatcttccaccgagttacactcgctaactcactc |
247 |
Q |
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| T |
26532806 |
tttcaaagacattcaaaccctcttctcagaagaacccaccacaatcaacaaacccaaaaaaacctctatcttccaccgagtcacactcgctaactcactt |
26532707 |
T |
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| Q |
248 |
ctccgagcctggtcaaatc |
266 |
Q |
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| T |
26532706 |
ctccgagcctggtcaaatc |
26532688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 26532970 - 26532937
Alignment:
| Q |
17 |
atccaaactttaaataatcaaactccactcttga |
50 |
Q |
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| T |
26532970 |
atccaaactttaaataatcaaactccactcttga |
26532937 |
T |
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