View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14331_high_14 (Length: 272)
Name: NF14331_high_14
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14331_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 50763598 - 50763417
Alignment:
| Q |
75 |
ttgaacagtaaactaacccaatttcggggaaccactggagagcaccgcgatagaaaaatctgcaacaatgaaaatttgcaatcagcacccaaattaagca |
174 |
Q |
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| T |
50763598 |
ttgaacagtaaactaacccaatttcggggaaccactggagagcaccgcgatagaaaaatctgcaacaatgaaaatttgcaatcagcacccaaattaagca |
50763499 |
T |
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| Q |
175 |
aacacgtgagggacaatcaaatttttgtttccacaaaactggtcttgaattgaatttctcagttttaaaaattcaatatatc |
256 |
Q |
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| T |
50763498 |
aacacgtgagggacaatcaaatttttgtttccacaaaactggtcttgaattgaatttctcagttttaaaaattcaatatatc |
50763417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 5809082 - 5809161
Alignment:
| Q |
82 |
gtaaactaacccaatttcggggaaccactggagagcaccgcgatagaaaaatctgcaacaatgaaaatttgcaatcagca |
161 |
Q |
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| T |
5809082 |
gtaaactaacccaaatttggggaaccactggagagcactgtgatagaaaaatctgcaacaatgaaaatttgttatcagca |
5809161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 5809184 - 5809282
Alignment:
| Q |
160 |
cacccaaattaagcaaacacgtgagggacaatcaaatttttg-tttccacaaaactggtcttgaattgaatttctcagttttaaaaa-ttcaatatatc |
256 |
Q |
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| T |
5809184 |
cacccaaatgaagcaaacacgtgagggaaaatcatatttgtgttttcctcgaaactggccttgaattaaatttctcagtttgaaaaacttcaatatatc |
5809282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 47954603 - 47954538
Alignment:
| Q |
85 |
aactaacccaatttcggggaaccactggagagcaccgcgatagaaaaatctgcaacaatgaaaatt |
150 |
Q |
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| T |
47954603 |
aactaacccaaattcaaggaaccactggagagcactgtgatagaaaaatctacaacaatgaaaatt |
47954538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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