View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14331_high_16 (Length: 254)
Name: NF14331_high_16
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14331_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 52294674 - 52294463
Alignment:
| Q |
19 |
acatcagataaagaacgcggatagataagaacttatagtgcaaaagccaaggatttgccttgttcatctggatttagtgcttgttttgaaatgtttatcg |
118 |
Q |
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| T |
52294674 |
acatcagataaagaacgcggatagataagaacttgtagtgcaaaagccaaggatttgccttgttcatctggatttagtgcttgtttcgaaatgtttatcg |
52294575 |
T |
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| Q |
119 |
ggtctgcaggaagaaactgttgtaactttgctannnnnnnaaaactacaaaaatgtctttatgaaatcaattaattaaacatacatttgacttgttttcc |
218 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52294574 |
ggtctgcaggaagaaactgttgtaactttgctattttttgaaaactacaaaaatgtcttta-------aattaattaaacatacatttgacttgttttcc |
52294482 |
T |
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| Q |
219 |
aagtttattcaataatatt |
237 |
Q |
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||||||||||||||||||| |
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| T |
52294481 |
aagtttattcaataatatt |
52294463 |
T |
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