View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14331_high_3 (Length: 577)

Name: NF14331_high_3
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14331_high_3
NF14331_high_3
[»] chr7 (4 HSPs)
chr7 (14-559)||(22313997-22314541)
chr7 (170-274)||(2867132-2867236)
chr7 (29-112)||(45506886-45506969)
chr7 (29-112)||(45512346-45512429)
[»] chr2 (1 HSPs)
chr2 (14-247)||(41491007-41491240)
[»] chr5 (2 HSPs)
chr5 (14-285)||(34207657-34207928)
chr5 (183-286)||(18301543-18301646)
[»] chr4 (3 HSPs)
chr4 (14-112)||(23858631-23858729)
chr4 (183-274)||(31831909-31832000)
chr4 (171-253)||(23858788-23858870)
[»] chr3 (4 HSPs)
chr3 (171-271)||(11591406-11591506)
chr3 (182-271)||(27488787-27488876)
chr3 (183-285)||(42965925-42966027)
chr3 (182-271)||(27477562-27477651)
[»] chr6 (1 HSPs)
chr6 (177-285)||(3814897-3815005)


Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 14 - 559
Target Start/End: Original strand, 22313997 - 22314541
Alignment:
Q  14 cataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22313997 cataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtg 22314096  T
Q  114 atcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314097 atcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctg 22314196  T
Q  214 tgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctgaaaatacccaaaaaatataataataattaac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314197 tgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctgaaaatacccaaaaaatataataataattaac 22314296  T
Q  314 ttaaa--tcattgcttctgttacagacaccgactccagacatgacattgatcacacttgacattagtaaaagttttaaaaaattaataaattaacagaat 411  Q
    |||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22314297 ttaaaggtcattgcttctgttgcagacaccgacaccagacatgacattgatcacacttgacattagtaaaagtttaaaaaaattaataaattaacagaat 22314396  T
Q  412 atttatgtgtgtcaaggtcgtgttagatatcagcgaacacgtcttcaatcaaaagtgttgtagaagtaattnnnnnnnttgataaaaaggtacagttgag 511  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22314397 gtttatgtgtgtcaaggtcgtgtaagatatcagcgaacacgtcttcaatcaaaagtgttgtagaagtaattaaaaaaattgataaaaaggtacagttgag 22314496  T
Q  512 ttttttgtgttatctatatgaaatggaaagatttgatgaaaagattgc 559  Q
    ||||||||||||||   |||||||||||| ||||||||||||||||||    
T  22314497 ttttttgtgttatc---atgaaatggaaaaatttgatgaaaagattgc 22314541  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 2867132 - 2867236
Alignment:
Q  170 ttcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatcca 269  Q
    |||| ||||||| |||||||| || ||||||||||||||||| ||||| | ||||||||| |||  |||||| |||||||| || ||||| |||||||||    
T  2867132 ttcataacatgcaccacaactcaatccattgttgaatagtgcagtgctcaatgctgctgtatttgttccataaccttggctataaaggtttccatatcca 2867231  T
Q  270 caagc 274  Q
    |||||    
T  2867232 caagc 2867236  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 45506886 - 45506969
Alignment:
Q  29 atcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagt 112  Q
    |||||||||||||||||| || || ||||| |||||||||||| ||||  | ||||| ||||| || ||||| ||||| |||||    
T  45506886 atcaaagtgaggtctagggggattacaccaaccaccattgtcattagggagtgcaaagtttggtggacaaaaatttgtggcagt 45506969  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 45512346 - 45512429
Alignment:
Q  29 atcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagt 112  Q
    |||||||||||||||||| || || ||||| |||||||||||| ||||  | ||||| ||||| || ||||| ||||| |||||    
T  45512346 atcaaagtgaggtctagggggattacaccaaccaccattgtcattagggagtgcaaagtttggtggacaaaaatttgtggcagt 45512429  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 41491007 - 41491240
Alignment:
Q  14 cataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtg 113  Q
    ||||||||| ||||||||||||||||| | ||| ||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||| || || |||    
T  41491007 cataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagtagctgtg 41491106  T
Q  114 atcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctg 213  Q
    || || || || ||| | |||| || ||||||  |    || |   ||||||| | ||||||||| |  ||||||||||  |||||||||||||||||||    
T  41491107 atgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaaacaagaaccacaacttagtccattgttgaatagtgctg 41491206  T
Q  214 tgcttagtgctgctgtgtttactccatagccttg 247  Q
    |||||| |||||||||||| |||||||| |||||    
T  41491207 tgcttaatgctgctgtgttaactccataaccttg 41491240  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 34207657 - 34207928
Alignment:
Q  14 cataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtg 113  Q
    |||||||||||||||||||||||| ||||  || ||||| ||||| || ||||| ||||| | ||||||||||||||| || ||||| ||||| |||||     
T  34207657 cataggcatagcaagatcaaagtgtggtcgtggagggttacaccaacctccattatcacttgcttgagcaaaatttggtggacaaaaatttgtagcagtt 34207756  T
Q  114 atcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctg 213  Q
    |  || ||||| ||  |||||||||  |||||||  ||||| |    |||||| |  |||||||| |  |||||||| || || ||||||||||||||||    
T  34207757 actaatattgaaggacttccagggtggcaccaactaggatcattggaacactttaactcaaaacacgagccacaactcaaaccgttgttgaatagtgctg 34207856  T
Q  214 tgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctgaaa 285  Q
    |||||| |||||||||||| || ||||| ||||| || || || || ||||| ||||| || || |||||||    
T  34207857 tgcttaatgctgctgtgttcacaccataaccttgactatacagatttccataaccacatgctccacctgaaa 34207928  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 18301543 - 18301646
Alignment:
Q  183 ccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctg 282  Q
    ||||| ||||| ||| ||||||| |  ||||||||||  || || ||||||  |||||| ||||| ||||||||||| ||||||||||| ||||| |||     
T  18301543 ccacagcttaaaccactgttgaacaaagctgtgcttaaagcagcagtgtttgttccataaccttgactgtataggtttccatatccacatgcaccaccta 18301642  T
Q  283 aaaa 286  Q
    ||||    
T  18301643 aaaa 18301646  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 23858631 - 23858729
Alignment:
Q  14 cataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagt 112  Q
    ||||||||||||||||||||| ||||| | ||| ||||| ||||| |||||||| ||||| | |||||||||||| ||||| |||||||| || |||||    
T  23858631 cataggcatagcaagatcaaaatgaggacgaggagggttacaccaaccaccattatcacttgcttgagcaaaattaggaggacaaaagttagtagcagt 23858729  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 31831909 - 31832000
Alignment:
Q  183 ccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagc 274  Q
    ||||| ||||||||||||||||| |||||||| || |  || || ||||||  |||||| ||||| ||||| ||||| ||||||||||||||    
T  31831909 ccacagcttaagccattgttgaaaagtgctgtactcaaagcagcagtgtttgttccatacccttgactgtaaaggttaccatatccacaagc 31832000  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 23858788 - 23858870
Alignment:
Q  171 tcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgta 253  Q
    |||||||| || ||||| ||||| ||||||||||| |  || ||||||| |||||||||||| ||||| || ||||| |||||    
T  23858788 tcaaaacaagcaccacagcttaaaccattgttgaacaaagcagtgcttaatgctgctgtgttcactccgtaaccttgactgta 23858870  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 11591506 - 11591406
Alignment:
Q  171 tcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccac 270  Q
    ||||||||||||||||| ||||| ||| |||||||||| || |||||||  || ||||||||    ||||| |||||||| || | ||||||||||||||    
T  11591506 tcaaaacatgctccacagcttaatccactgttgaatagagcagtgcttaaagcagctgtgttagtcccatacccttggctatacaagttcccatatccac 11591407  T
Q  271 a 271  Q
    |    
T  11591406 a 11591406  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 27488787 - 27488876
Alignment:
Q  182 tccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccaca 271  Q
    |||||| ||||| ||||||||||| |  || ||||||||||||||||||||   |||||| |||||||| ||||  || |||||||||||    
T  27488787 tccacagcttaaaccattgttgaacaaagcagtgcttagtgctgctgtgttggttccatatccttggctatataaatttccatatccaca 27488876  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 42966027 - 42965925
Alignment:
Q  183 ccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctg 282  Q
    |||||||| || ||||||||||| || || ||||||||||| || |||||   ||||||||||||||| || |  || ||||| |||||||| || ||||    
T  42966027 ccacaactcaatccattgttgaaaagagcagtgcttagtgcagcagtgttggttccatagccttggctatacaaatttccataaccacaagcccctcctg 42965928  T
Q  283 aaa 285  Q
    |||    
T  42965927 aaa 42965925  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 27477562 - 27477651
Alignment:
Q  182 tccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccaca 271  Q
    |||||| ||||| ||||||||||| |  || ||||||||||||||||||||   |||||| |||||||| || |  || |||||||||||    
T  27477562 tccacagcttaaaccattgttgaacaaagcagtgcttagtgctgctgtgttggttccatatccttggctatacaaatttccatatccaca 27477651  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 3814897 - 3815005
Alignment:
Q  177 catgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcac 276  Q
    ||||| |||||||| || ||||||||||||| ||| ||||| ||||||||||| ||    ||||| ||||| || || | ||| ||||||||||| ||||    
T  3814897 catgcaccacaactcaaaccattgttgaataatgcagtgctaagtgctgctgtattagtcccataaccttgactatacaagtttccatatccacatgcac 3814996  T
Q  277 cgcctgaaa 285  Q
    | |||||||    
T  3814997 cacctgaaa 3815005  T

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