View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14331_high_5 (Length: 500)
Name: NF14331_high_5
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14331_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Original strand, 1218708 - 1219188
Alignment:
| Q |
16 |
gttttgtgtaacagattgtgttgcaaatttcttccattttaaatctataatattgtatcagttcataagtgctattattttggaaatgacaaaggtgcta |
115 |
Q |
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| T |
1218708 |
gttttgtgtaacagattgtgttgcaaatttc---cattttaa-tctataatgttgtatcagttcataagtgctattattttggaaatgacaaaggtgcta |
1218803 |
T |
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| Q |
116 |
ttaatctgaattcttaggaaaggagaaaggtgctattgtcctggaaatgaaggacagaggttattgctcagagaggaaaattaattggaacagaaagctt |
215 |
Q |
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| T |
1218804 |
ttaatctgaattcttaggaaaggagaaaggtgctattgtcctggaaatgaaggacagaggttattgctcagagaggaaaattaattggaacagaaagctt |
1218903 |
T |
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| Q |
216 |
cagaaacagttaatatttgatgatcttcgcgttcgttcaatgcaaaacaggattcgagcaaaggtctctggtcataatagttcagaacaatcttcagaaa |
315 |
Q |
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| T |
1218904 |
cagaaacagttaatatttgatgatcttcgcgttcgttcaatgcaaaacaggattcgagccaaggtctctggccataatagttcagaacaatcttcagaaa |
1219003 |
T |
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| Q |
316 |
tccaaattccattagcttctggtataaatttggagactttaaactacatagtgacaataggattgggtaatcagaacatgactgtgataatcgataccgg |
415 |
Q |
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| T |
1219004 |
tccaaattccattagcttctggtataaatttggagactttaaactacattgtgacaataggattgggtaatcagaacatgactgtgataatcgataccgg |
1219103 |
T |
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| Q |
416 |
aagtgacttaacatgggtccaatgtgatccatgtatgtcatgttatagtcaacaaggacctgttttcaacccttctaactcctct |
500 |
Q |
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| T |
1219104 |
aagtgacttaacatgggtccaatgtgatccatgtatgtcatgttatagtcaacaaggacctgttttcaacccttctaactcctct |
1219188 |
T |
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