View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14331_low_16 (Length: 264)

Name: NF14331_low_16
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14331_low_16
NF14331_low_16
[»] chr7 (22 HSPs)
chr7 (13-118)||(15956852-15956957)
chr7 (154-249)||(20419679-20419774)
chr7 (158-249)||(12006683-12006774)
chr7 (154-249)||(20963638-20963733)
chr7 (154-249)||(23704801-23704896)
chr7 (154-249)||(38879867-38879962)
chr7 (158-249)||(41600101-41600192)
chr7 (154-249)||(20458834-20458929)
chr7 (154-249)||(23383643-23383738)
chr7 (158-249)||(48672422-48672513)
chr7 (154-248)||(7658114-7658207)
chr7 (158-249)||(10409518-10409609)
chr7 (154-249)||(31851382-31851477)
chr7 (154-249)||(44816978-44817073)
chr7 (155-249)||(33162676-33162770)
chr7 (158-235)||(28218320-28218397)
chr7 (154-237)||(6465994-6466077)
chr7 (154-249)||(1250349-1250444)
chr7 (164-237)||(24194941-24195014)
chr7 (154-197)||(25772527-25772569)
chr7 (200-249)||(48648404-48648453)
chr7 (201-249)||(25772506-25772554)
[»] chr5 (18 HSPs)
chr5 (154-249)||(7126060-7126155)
chr5 (154-249)||(4919133-4919228)
chr5 (154-249)||(6817265-6817359)
chr5 (154-249)||(14144041-14144136)
chr5 (154-249)||(20709355-20709450)
chr5 (154-249)||(29444946-29445041)
chr5 (153-249)||(41001496-41001592)
chr5 (154-249)||(24650843-24650937)
chr5 (154-249)||(24837312-24837407)
chr5 (154-249)||(31799783-31799878)
chr5 (154-249)||(17762422-17762517)
chr5 (155-249)||(993890-993983)
chr5 (154-249)||(23979042-23979136)
chr5 (154-247)||(24074443-24074535)
chr5 (154-197)||(14411837-14411880)
chr5 (154-195)||(27159154-27159195)
chr5 (200-249)||(18336642-18336691)
chr5 (154-242)||(22571227-22571315)
[»] chr1 (18 HSPs)
chr1 (155-249)||(17606449-17606543)
chr1 (154-249)||(39711212-39711307)
chr1 (153-249)||(33628833-33628929)
chr1 (154-249)||(30299371-30299466)
chr1 (154-249)||(48072101-48072196)
chr1 (154-249)||(4907105-4907200)
chr1 (154-249)||(20995809-20995903)
chr1 (154-249)||(24467768-24467862)
chr1 (158-249)||(39826193-39826284)
chr1 (154-249)||(42510157-42510252)
chr1 (154-249)||(43539487-43539582)
chr1 (154-249)||(13229872-13229966)
chr1 (154-249)||(18462425-18462519)
chr1 (154-249)||(52058154-52058249)
chr1 (154-244)||(29696704-29696793)
chr1 (154-249)||(39970789-39970883)
chr1 (154-218)||(8292944-8293008)
chr1 (200-249)||(34749280-34749329)
[»] chr8 (17 HSPs)
chr8 (154-249)||(10108510-10108605)
chr8 (154-249)||(2583460-2583555)
chr8 (154-249)||(17623030-17623125)
chr8 (154-248)||(42605893-42605987)
chr8 (154-243)||(14767656-14767745)
chr8 (158-249)||(7689667-7689758)
chr8 (154-249)||(26136825-26136920)
chr8 (158-249)||(30789650-30789741)
chr8 (158-249)||(43851807-43851898)
chr8 (154-243)||(21148086-21148174)
chr8 (154-249)||(22494524-22494619)
chr8 (154-249)||(42113127-42113222)
chr8 (155-249)||(26532926-26533020)
chr8 (154-247)||(5555009-5555102)
chr8 (154-249)||(43481457-43481552)
chr8 (170-247)||(22848464-22848540)
chr8 (154-241)||(14820434-14820521)
[»] chr4 (20 HSPs)
chr4 (154-249)||(48580009-48580104)
chr4 (153-242)||(9516760-9516849)
chr4 (154-249)||(3018152-3018247)
chr4 (154-249)||(4356021-4356116)
chr4 (154-249)||(18667429-18667524)
chr4 (154-249)||(34064125-34064220)
chr4 (154-249)||(37012850-37012945)
chr4 (158-249)||(46046567-46046658)
chr4 (158-249)||(7819158-7819249)
chr4 (154-249)||(9396839-9396934)
chr4 (158-249)||(38574111-38574202)
chr4 (153-249)||(31090204-31090300)
chr4 (154-249)||(3273762-3273855)
chr4 (154-249)||(13132084-13132179)
chr4 (154-242)||(18713100-18713188)
chr4 (158-246)||(31944094-31944182)
chr4 (154-249)||(15640855-15640950)
chr4 (161-246)||(9619126-9619211)
chr4 (164-249)||(48259901-48259986)
chr4 (154-197)||(26252408-26252451)
[»] chr6 (12 HSPs)
chr6 (154-249)||(33714630-33714725)
chr6 (153-249)||(24732077-24732173)
chr6 (154-249)||(9481322-9481417)
chr6 (161-249)||(26385421-26385509)
chr6 (154-249)||(30618102-30618196)
chr6 (154-249)||(10321873-10321969)
chr6 (154-239)||(3230016-3230101)
chr6 (154-249)||(2299453-2299547)
chr6 (155-232)||(17142798-17142875)
chr6 (200-249)||(32017679-32017728)
chr6 (154-210)||(30459083-30459139)
chr6 (154-197)||(33637699-33637742)
[»] chr3 (23 HSPs)
chr3 (154-249)||(14162011-14162106)
chr3 (154-249)||(5800745-5800840)
chr3 (158-249)||(14171729-14171820)
chr3 (154-249)||(19112908-19113003)
chr3 (154-249)||(49986668-49986763)
chr3 (154-243)||(15328600-15328689)
chr3 (158-243)||(43572535-43572620)
chr3 (153-249)||(17465511-17465606)
chr3 (153-249)||(30500184-30500280)
chr3 (154-249)||(14262179-14262274)
chr3 (154-249)||(21633036-21633131)
chr3 (154-249)||(45970055-45970150)
chr3 (155-249)||(45003637-45003731)
chr3 (158-243)||(33372550-33372635)
chr3 (154-242)||(9267125-9267213)
chr3 (153-249)||(38283689-38283785)
chr3 (154-249)||(4204851-4204946)
chr3 (154-249)||(20853839-20853934)
chr3 (154-249)||(16722131-16722226)
chr3 (154-249)||(47575415-47575510)
chr3 (154-249)||(35995821-35995916)
chr3 (154-249)||(52552835-52552926)
chr3 (158-218)||(11003876-11003936)
[»] chr2 (17 HSPs)
chr2 (154-249)||(23854809-23854904)
chr2 (154-249)||(17463231-17463326)
chr2 (154-249)||(22263334-22263429)
chr2 (154-249)||(23806092-23806187)
chr2 (154-249)||(26560697-26560792)
chr2 (154-249)||(42670862-42670957)
chr2 (158-249)||(15106211-15106302)
chr2 (154-243)||(39878242-39878331)
chr2 (158-249)||(17850729-17850820)
chr2 (153-249)||(13284551-13284647)
chr2 (153-249)||(19251609-19251705)
chr2 (154-249)||(26135957-26136052)
chr2 (154-249)||(20498885-20498980)
chr2 (154-237)||(33290189-33290272)
chr2 (200-249)||(26236281-26236330)
chr2 (154-197)||(26236267-26236309)
chr2 (200-249)||(30390602-30390651)
[»] scaffold0361 (1 HSPs)
scaffold0361 (154-249)||(4703-4798)
[»] scaffold0809 (1 HSPs)
scaffold0809 (153-249)||(1549-1645)
[»] scaffold0185 (1 HSPs)
scaffold0185 (154-250)||(4011-4107)
[»] scaffold0881 (1 HSPs)
scaffold0881 (154-249)||(363-457)
[»] scaffold0141 (1 HSPs)
scaffold0141 (158-249)||(8467-8557)
[»] scaffold0176 (1 HSPs)
scaffold0176 (169-218)||(15807-15856)
[»] scaffold0449 (1 HSPs)
scaffold0449 (154-197)||(7394-7437)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 15956852 - 15956957
Alignment:
Q  13 tagggagtaagtatattggtgatgtactcttacttgggttcactgttaatgctgatatcattggagatgccccacatactgctcccattgatcctgagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15956852 tagggagtaagtatattggtgatgtactcttacttgggttcactgttaatgctgatatcattggagatgccccacatactgctcccattgatcctgagat 15956951  T
Q  113 ttgttt 118  Q
    ||||||    
T  15956952 ttgttt 15956957  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 20419774 - 20419679
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| |||||||||||||||| ||||||    
T  20419774 cataaattacgtccttgtaatttcagattcctcccacttttggtccctgtaatttcatattcctccacttttggtccctcattttacgtaccatgt 20419679  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 12006774 - 12006683
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  12006774 aattacgtccttgtaatttcagattcctcccacttttggtcactgtaatttcagattcctccacttttgatccctcattttacgtgccatgt 12006683  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 20963733 - 20963638
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||||||||||||||||||||||   |||||||||| |||| || | |||| |||||||||||||||||||||||    
T  20963733 cataaattacgtccctgtaatttcatattcctcccacttttggtccttgtaatttcatattcttccacttttggtccctcattttacgtgccatgt 20963638  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 23704801 - 23704896
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  23704801 cataaattacttccctgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttggtccctcattttacgtgccatgt 23704896  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 38879962 - 38879867
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |  ||| ||||||||||||| |||||||||    
T  38879962 cataaattacgtccctgtaatttcatattcctcccacttttggtctctataatttcagattcctccaaatttggtccctcattttatgtgccatgt 38879867  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 41600192 - 41600101
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  41600192 aattacgtccttgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttgatccctcattttacgtgccatgt 41600101  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 20458929 - 20458834
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||   |||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  20458929 cataaattacgtccctgtaatttcagattcctcccgcttttggtccttgtaatttcagattcctccacttttggtccctcattttacgtgccatgt 20458834  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 23383738 - 23383643
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||| |||||||||||||||| | ||||||||||||||||||   |||||||||||||||||  | |||| ||||||||||||||||| |||||    
T  23383738 cataaactacgtccttgtaattttagattcctcccacttttggtccttgtaatttcaaattccttcacttttggtccctcattttacgtgtcatgt 23383643  T

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Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 48672513 - 48672422
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||||||   |||||||||| ||||||| | ||||  ||||||||||||| ||||||||    
T  48672513 aattacgtccttgtaatttcaaattcctcccacttttggtccttgtaatttcagattcctccacttttgatccctcattttacatgccatgt 48672422  T

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Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 7658207 - 7658114
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatg 248  Q
    ||||||||| |||| |||||||||||||||||||||||||||| | || |||||||| |||| |||| |||| ||||||||||||||||| ||||    
T  7658207 cataaattatgtccctgtaatttcatattcctcccacttttgg-tcctttaatttcagattcatctacttttagtccctcattttacgtgacatg 7658114  T

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Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 10409518 - 10409609
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| |||||||| |||||||||   |||||||||| ||||||| | ||||  ||||||||||||| ||||||||    
T  10409518 aattacgtccttgtaatttcagattcctcctacttttggtccttgtaatttcagattcctccacttttgatccctcattttacatgccatgt 10409609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31851477 - 31851382
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||| || ||||| |  ||||||||||| ||| ||| | |||| |||||||||||||||||||||||    
T  31851477 cataaattacgtccctgtaatttcagattcctctcaattttgatccctgtaatttcatatttctccacttttggtccctcattttacgtgccatgt 31851382  T

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Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 44817073 - 44816978
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||| | |||| ||||| |||||| |||||||||||   |||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  44817073 cataaattacgtacatgtagtttcaaattccttccacttttggtccttgtaatttcagattcctccacttttggtccctcattttacgtgccatgt 44816978  T

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Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 33162676 - 33162770
Alignment:
Q  155 ataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| |||||||||||| |||||| |||||||||||   |||||||||| ||| ||  | |||| ||||||||||||| |||||||||    
T  33162676 ataaattacgttcttgtaatttcaaattccttccacttttggtccgtgtaatttcagattacttcacttttggtccctcattttatgtgccatgt 33162770  T

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Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 28218397 - 28218320
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcat 235  Q
    |||||||||| |||||||||| ||||||||||||||||||  ||||||||||| ||| ||| | |||| |||||||||    
T  28218397 aattacgtccctgtaatttcagattcctcccacttttggtccctgtaatttcagattactccacttttggtccctcat 28218320  T

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Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 6465994 - 6466077
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattt 237  Q
    ||||||||| |||| |||||||||| |||||||||||||||| |  ||||||||||| ||| ||| | |||| |||||||||||    
T  6465994 cataaattatgtccctgtaatttcaaattcctcccacttttgatccctgtaatttcatattactccacttttggtccctcattt 6466077  T

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Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 1250444 - 1250349
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  |||||||| || ||||||| | ||||  ||| ||||||||| || |||||    
T  1250444 cataaattacgtccctgtaatttcaaattcctcctatttttggtcactgtaattccatattcctccacttttaatccttcattttacatgacatgt 1250349  T

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Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 24194941 - 24195014
Alignment:
Q  164 gtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattt 237  Q
    |||| |||||||||| ||||||| ||||||||||  || |||||||| ||||||| | |||| |||||||||||    
T  24194941 gtccctgtaatttcagattcctctcacttttggtccctataatttcagattcctccacttttggtccctcattt 24195014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 25772569 - 25772527
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggt 197  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  25772569 cataaattacgtccttgtaatttcagattcct-ccacttttggt 25772527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 48648453 - 48648404
Alignment:
Q  200 ctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||||||| | |||| ||||||| |||||||||||||||    
T  48648453 ctgtaatttcagattcctccaattttggtccctccttttacgtgccatgt 48648404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 25772554 - 25772506
Alignment:
Q  201 tgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| ||||||| | |||| |||||||||||||||| ||||||    
T  25772554 tgtaatttcagattcctccacttttggtccctcattttacgtaccatgt 25772506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 7126155 - 7126060
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  7126155 cataaattacgtccctgtaatttcatattcctcccacttttggtccctgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 7126060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 4919228 - 4919133
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||| | |||| |||||||||||||||| ||||||    
T  4919228 cataaattacgtccttgtaatttcatattcctccaacttttggtcactgtaatttcaaattcctccacttttggtccctcattttacgtaccatgt 4919133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 6817359 - 6817265
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||||||||| || ||||||||||| ||||||| |||||| |||||| ||||||||||||||||    
T  6817359 cataaattacgtccctgtaatttcaaattcctcccacttttgatt-ctgtaatttcagattcctccatttttggtcccttattttacgtgccatgt 6817265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 14144041 - 14144136
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||| |||||||||||   |||||||||||||||||| | |||| |||||||||||||||||||||||    
T  14144041 cataaattacgtccctgtaatttcagattccttccacttttggtccatgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 14144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 20709450 - 20709355
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| ||| |||||||||| |||||||||||||||| |  ||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  20709450 cataaattacatccctgtaatttcagattcctcccacttttgatccctgtaatttcatattcctccactttttgtccctcattttacgtgccatgt 20709355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 29444946 - 29445041
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  ||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  29444946 cataaattacgtccctgtaatttcagattcctcctagttttggtccctgtaatttcaaattcctacattttttgtccctcattttacgtgtcatgt 29445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 41001592 - 41001496
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| |||  ||||||||||| |||||||||||| ||||  ||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  41001592 acataaattatgtcactgtaatttcatcttcctcccacttctggtccctgtaatttcagattcctccatttttagtccctcattttacgtgccatgt 41001496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 24650937 - 24650843
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| ||| |||||||||||||| |||||||||| |||  ||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  24650937 cataaattacatccctgtaatttcatatttctcccacttt-ggtccctgtaatttcagattcctccatttttggtccctcattttacgtgccatgt 24650843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 24837407 - 24837312
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||| ||||||| | ||||  ||||||||||||||| ||||||    
T  24837407 cataaattacgtccttgtaatttcagattcctctcacttttggtccctgtaatttcagattcctccacttttgatccctcattttacgtaccatgt 24837312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31799878 - 31799783
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| | |||||||| ||||||||||||||||||  ||||||||||||| ||||| | |||| |||||||||||||| ||||||||    
T  31799878 cataaattacgtccctttaatttcagattcctcccacttttggtccctgtaatttcaaaatcctccacttttggtccctcattttacatgccatgt 31799783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 17762422 - 17762517
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||||||||||||| ||||||||  ||||||||| | ||||||| | |||| ||||||||||||| || ||||||    
T  17762422 cataaattacgtccctgtaatttcatattcctcccgcttttggtccctgtaattttagattcctccacttttggtccctcattttatgtcccatgt 17762517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 993983 - 993890
Alignment:
Q  155 ataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||| |||||||||| ||||||||||||||||||  |||||| |||| ||||||| | |||| ||||||||||||||||| |||||    
T  993983 ataaattacgtccctgtaatttcagattcctcccacttttggtccctgtaa-ttcatattcctccacttttggtccctcattttacgtgtcatgt 993890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 23979042 - 23979136
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  || |||||||| ||| ||| |  ||| || |||||||||||||| |||||    
T  23979042 cataaattacgtccttgtaatttcatatttctcccacttttggtccctttaatttcagattactccacgtttggt-cctcattttacgtgtcatgt 23979136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 24074443 - 24074535
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccat 247  Q
    ||||||||||||||   |||||||| |||| ||||||||||| |  ||||||||||||||| ||| | |||| |||||||||||||||||||||    
T  24074443 cataaattacgtccccataatttcagattcatcccacttttgatc-ctgtaatttcaaatttctccacttttggtccctcattttacgtgccat 24074535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 14411837 - 14411880
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggt 197  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  14411837 cataaattacgtccctgtaatttcagattcctcccacttttggt 14411880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 27159195 - 27159154
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttg 195  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  27159195 cataaattacgtccctgtaatttcagattcctcccacttttg 27159154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 18336642 - 18336691
Alignment:
Q  200 ctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||| |||||    
T  18336642 ctgtaatttcagattcctccacttttggtccctcattttacgtgacatgt 18336691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 22571315 - 22571227
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgt 242  Q
    |||||||||||||| ||||||||||  ||||||| || ||||||  || |||||||| |||| ||   |||| ||||||||||| ||||    
T  22571315 cataaattacgtccctgtaatttcaggttcctcctacatttggtccctctaatttcatattcatccgcttttggtccctcatttcacgt 22571227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 17606449 - 17606543
Alignment:
Q  155 ataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  17606449 ataaattacgtccctgtaatttcatattcctcccacttttggtccctgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 17606543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 39711212 - 39711307
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||  ||||||| | |||| |||||||||||||||||||||||    
T  39711212 cataaattacgtccttgtaatttcatattcctcccgcttttggtccctgtaatttcggattcctccacttttggtccctcattttacgtgccatgt 39711307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 33628929 - 33628833
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| |||| |||||||||| ||||||||| ||||||||  ||||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  33628929 acataaattatgtccctgtaatttcaaattcctcccgcttttggtccctgtaatttcagattcctctacttttggtccctcattttacgtgccatgt 33628833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 30299371 - 30299466
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||  |||||||||| ||||||| | |||| ||||||||||||| |||||||||    
T  30299371 cataaattacgtccctgtaatttcagattcctcccacttttagttcttgtaatttcagattcctccacttttggtccctcattttatgtgccatgt 30299466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 48072101 - 48072196
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||||||||| |  ||||||||||| ||||||| | |||| ||||||||||||||||| |||||    
T  48072101 cataaattacgtccctgtaatttcaaattcctcccacttttgatccctgtaatttcagattcctccacttttggtccctcattttacgtgacatgt 48072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 4907200 - 4907105
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| |||||||||  ||||||||||| |||| || | |||| |||||||||||||| ||||||||    
T  4907200 cataaattacgtccctgtaatttcagattcctcctacttttggtccctgtaatttcagattcatccacttttagtccctcattttacatgccatgt 4907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 20995809 - 20995903
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||| ||| | |||| |||||||| ||||||||||||||    
T  20995809 cataaattacgtccctgtaatttcagattcctcccacttttcgtccctgtaatttcaaatttctccacttttggtccctca-tttacgtgccatgt 20995903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 24467768 - 24467862
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||| ||| |  ||| || ||||||||||||||||||||    
T  24467768 cataaattacgtcattgtaatttcatattcctcccacttttggtccctgtaatttcagattactccacatttggt-cctcattttacgtgccatgt 24467862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 39826284 - 39826193
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||| | |||||||||||||||| |  ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  39826284 aattacgtccttgtaattttagattcctcccacttttgatccctgtaatttcatattcctccacttttgatccctcattttacgtgccatgt 39826193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 42510252 - 42510157
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||  || |||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| ||||||||||| |||||||||||    
T  42510252 cataaattacacccctgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttggtccctcatttcacgtgccatgt 42510157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 43539487 - 43539582
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||| | |||||||||||||||| |  ||||||||||||||||||| | |||| || |||||||||||||| |||||    
T  43539487 cataaattacgtccctgtaattttagattcctcccacttttgctccctgtaatttcaaattcctccacttttggtacctcattttacgtgtcatgt 43539582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 13229872 - 13229966
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||| ||||||||| | ||||||||||| ||||||| | |||| |||||||||||| |||| |||||    
T  13229872 cataaattacgtccctgtaatttcagattcctctcacttttgg-tcctgtaatttcagattcctccacttttggtccctcattttgcgtgtcatgt 13229966  T

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Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 18462425 - 18462519
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  || |||||||| ||| ||| |  ||| || ||||||||| ||||||||||    
T  18462425 cataaattacgtcattgtaatttcatattcctcccacttttggtccctataatttcatattactccacgtttggt-cctcattttgcgtgccatgt 18462519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 52058249 - 52058154
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| | | |||||| ||||||||||||||||||   |||||||||| ||| ||| | |||| ||||||||||||||||| |||||    
T  52058249 cataaattacgtccctatgatttcagattcctcccacttttggtccttgtaatttcatattactccacttttggtccctcattttacgtgtcatgt 52058154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 29696704 - 29696793
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgc 244  Q
    ||||||||| |||| | |||||||||||||||||||| ||||||  ||||| ||||| ||||||| | |||| ||||||||||||||||||    
T  29696704 cataaattatgtccctataatttcatattcctcccac-tttggtccctgtattttcagattcctccacttttggtccctcattttacgtgc 29696793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 39970883 - 39970789
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||  |||| || ||||| | ||||||||||||||||||   |||||||||| |||| || | |||| |||||||||||||||||||||||    
T  39970883 cataaattgtgtccctgaaattttagattcctcccacttttggtca-tgtaatttcagattcatccacttttggtccctcattttacgtgccatgt 39970789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 8292944 - 8293008
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctc 218  Q
    |||||||||||||| |||||||||| |||||||| |||||||||   |||||||| | |||||||    
T  8292944 cataaattacgtccctgtaatttcagattcctcctacttttggtccatgtaattttagattcctc 8293008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 34749329 - 34749280
Alignment:
Q  200 ctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||||||| | |||| |||||||||||||| ||||||||    
T  34749329 ctgtaatttcagattcctccacttttggtccctcattttacatgccatgt 34749280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 10108510 - 10108605
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  10108510 cataaattacgtccttgtaatttcagattcgtcccacttttggtccctgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 10108605  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 2583460 - 2583555
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| |||||||||  ||||||||||||||||||| | |||| |||||||||||||| ||||||||    
T  2583460 cataaattacgtccctgtaatttcagattcctcctacttttggtccctgtaatttcaaattcctccacttttagtccctcattttacatgccatgt 2583555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 17623125 - 17623030
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  17623125 cataaattatgtccctgtaatttcaaattcctcccacttttggtccctgtaatttcagattcctccacttttggtccctcattttacgtgccatgt 17623030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 42605893 - 42605987
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatg 248  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||  ||||||||||| ||||||| | |||| ||||||||||||||||||||||    
T  42605893 cataaattacgtccctgtaatttcaaattcctcccgcttttggtcgctgtaatttcagattcctccacttttggtccctcattttacgtgccatg 42605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 14767745 - 14767656
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtg 243  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||| | |||| ||| |||||||||||||    
T  14767745 cataaattacgtccctgtaatttcagattcctcccacttttggtccctgtaatttcaaattcctccacttttggtctctcattttacgtg 14767656  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 7689667 - 7689758
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  7689667 aattacgtccttgtaatttcagattcctcccacttttagtccctgtaatttcagattcctccacttttgatccctcattttacgtgccatgt 7689758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26136825 - 26136920
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||   |||| ||||| ||||||| |||||| |||||||||||||||||||||||    
T  26136825 cataaattacgtccctgtaatttcagatttctcccacttttggtccttgtactttcagattcctccatttttggtccctcattttacgtgccatgt 26136920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 30789741 - 30789650
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||| | ||||  |||||||| |||||||||||||    
T  30789741 aattacgtccttgtaatttcatattcctcccacttttggtccttgtaatttcagattcctccacttttgatccctcatcttacgtgccatgt 30789650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 43851898 - 43851807
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | ||||  |||||||||||||||| |||||    
T  43851898 aattacgtccttgtaatttcagattcctcccacttttggtccctgtaatttcatattcctccacttttgatccctcattttacgtgtcatgt 43851807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 21148174 - 21148086
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtg 243  Q
    |||||||||||||| |||||||||| ||||||||||||||||| | || |||||||||||||||| | |||| |||||||||||||||||    
T  21148174 cataaattacgtccctgtaatttcagattcctcccacttttgg-tcctataatttcaaattcctccacttttggtccctcattttacgtg 21148086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 22494524 - 22494619
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||| | |||||||| |||||||||  | ||||||||| ||||||| | |||| ||||||||||||||||| |||||    
T  22494524 cataaattacgtccctgtaattttagattcctcctacttttggtcccagtaatttcagattcctccacttttggtccctcattttacgtgtcatgt 22494619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 42113222 - 42113127
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||| |||| |||||||||||||||||||||||||||||  || |||||||| ||| ||| | |||| ||||||||||||| ||| |||||    
T  42113222 cataaattatgtccctgtaatttcatattcctcccacttttggtccctataatttcatattactccacttttggtccctcattttatgtgtcatgt 42113127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 26533020 - 26532926
Alignment:
Q  155 ataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||| |||||||||||||| | ||||| ||||||||||| || |||||||| ||||||| | ||||  |||||||||||||||| |||||    
T  26533020 ataaattacatccttgtaatttcaaactcctcacacttttggttcctataatttcagattcctccacttttaatccctcattttacgtgtcatgt 26532926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 5555009 - 5555102
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccat 247  Q
    |||||||||||||| || ||||||| |||||||| | |||||||  |||||||||| |||||||  | |||| |||||||||||||||||||||    
T  5555009 cataaattacgtccctggaatttcagattcctcctagttttggtccctgtaatttcgaattccttcacttttggtccctcattttacgtgccat 5555102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 43481552 - 43481457
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||||  || ||||| | |||||||| | ||||||| | ||||  |||||| |||||||||||||||    
T  43481552 cataaattacgtccttgtaatttcagattcctcctgctcttggtctttgtaattttagattcctccacttttgatccctcgttttacgtgccatgt 43481457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 22848540 - 22848464
Alignment:
Q  170 gtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccat 247  Q
    |||||||||||||| |  |||||||||| |||||||||||||||||||| ||||||| | |||||||| |||||||||    
T  22848540 gtaatttcatattcttttcacttttggtctctgtaatttcaaattcctccattttttat-cctcatttcacgtgccat 22848464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 14820434 - 14820521
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacg 241  Q
    |||||||||||||| |||||||||| ||| |||| | ||||| |  | ||||| ||||||||||||| |||| |||||||||||||||    
T  14820434 cataaattacgtccctgtaatttcagatttctcctagttttgctccccgtaatctcaaattcctctacttttggtccctcattttacg 14820521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 48580104 - 48580009
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| | ||||  ||||||||||||||||||||||    
T  48580104 cataaattacgtccttgtaatttcaaattcctcccacttttggtctctctaatttcaaattcctccacttttgctccctcattttacgtgccatgt 48580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 9516849 - 9516760
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgt 242  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| ||||||||||||||||    
T  9516849 acataaattacgtccttgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttggtccctcattttacgt 9516760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 3018152 - 3018247
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  || |||||||||||||||| | |||| ||||||||||||||||| |||||    
T  3018152 cataaattacggccttgtaatttcacattcctcccacttttggtccctataatttcaaattcctccacttttggtccctcattttacgtgtcatgt 3018247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 4356021 - 4356116
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| |||||||| |||||||||   |||||||||||||||||| | |||| ||||||||||||||||| |||||    
T  4356021 cataaattacgtccttgtaatttcagattcctcctacttttggtccttgtaatttcaaattcctccacttttggtccctcattttacgtgtcatgt 4356116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 18667429 - 18667524
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| |||||||||  ||||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  18667429 cataaattacgtccctgtaatttcagattcctccaacttttggtccctgtaattttaaattcctccacttttggtccctcattttacgtgccatgt 18667524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 34064220 - 34064125
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||| ||||||| | |||| |||||||||||||| ||||||||    
T  34064220 cataaattacgtccttgtaatttcagattcctcctacttttggtccctgtaatttcagattcctccacttttagtccctcattttacatgccatgt 34064125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 37012945 - 37012850
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||   |||||||||||||||||| | |||| |||||||||||||||||||||||    
T  37012945 cataaattacgtccctgtaatttcatattcttcctacttttggtccttgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 37012850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 46046658 - 46046567
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  46046658 aattacgtccttgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttgatccctcattttacgtgccatgt 46046567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 7819158 - 7819249
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| |||||||||| ||||||||||||||||||   |||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  7819158 aattacgtccatgtaatttcagattcctcccacttttggtccatgtaatttcatattcctccacttttggtccctcattttacgtgccatgt 7819249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 9396839 - 9396934
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||||||||| |  ||||||||||| ||||||| | |||| ||||||||||||||||| |||||    
T  9396839 cataaattacgtccctgtaatttcagattcctcccacttttgatccctgtaatttcatattcctccacttttggtccctcattttacgtgtcatgt 9396934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 38574202 - 38574111
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||| ||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||| | |||| |||||||||||||| ||||||||    
T  38574202 aattgcgtccctgtaatttcagattcctcccacttttggtctctgtaatttcatattcctccacttttggtccctcattttacatgccatgt 38574111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 31090300 - 31090204
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||||| ||||||| | |||| |||| ||||||||||| ||||||    
T  31090300 acataaattacgtccttgtaatttcagatttctcccacttttggtccccgtaatttcagattcctccacttttggtccttcattttacgtaccatgt 31090204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 3273762 - 3273855
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| ||| |  ||| || ||||||||||||||||||||    
T  3273762 cataaattacgtccttgtaatttcatattcctcccacttttgg-tcctgtaatttcagattactccacgtttggt-cctcattttacgtgccatgt 3273855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 13132179 - 13132084
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||||   |||||||||| ||| ||| | |||| | ||||||||||||||| |||||    
T  13132179 cataaattacgtccttgtaatttcatatttctcccacttttggtccatgtaatttcagattactccacttttagcccctcattttacgtgtcatgt 13132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 18713100 - 18713188
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgt 242  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||   |||||||||||||||||| | |||| |||||||| |||||||    
T  18713100 cataaattacgtccctgtaatttcagattcctccctcttttggtccatgtaatttcaaattcctcaacttttggtccctcagtttacgt 18713188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 31944094 - 31944182
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgcca 246  Q
    ||||| |||| |||||||||| ||||||||||||||||||   |||||||||| ||||||| | |||| ||||||||||||||||||||    
T  31944094 aattatgtccatgtaatttcagattcctcccacttttggtccatgtaatttcagattcctccacttttggtccctcattttacgtgcca 31944182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 15640855 - 15640950
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||||||||| |   |||||||||| ||||||| | |||| |||| |||||||||||| |||||    
T  15640855 cataaattacgtccctgtaatttcagattcctcccacttttgatccttgtaatttcagattcctccacttttggtccatcattttacgtgtcatgt 15640950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 9619126 - 9619211
Alignment:
Q  161 tacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgcca 246  Q
    ||||||| ||||||||||||||||||||| |||||||  ||||||||||| ||||||| | ||||  |||||| ||||||||||||    
T  9619126 tacgtccctgtaatttcatattcctcccatttttggtccctgtaatttcagattcctccacttttgctccctctttttacgtgcca 9619211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 48259901 - 48259986
Alignment:
Q  164 gtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||| |||||||||| |||||||| |||||||||  |||| |||||| ||||||| | ||||  ||||||||||||||||||||||    
T  48259901 gtccatgtaatttcagattcctcctacttttggtccctgttatttcagattcctccacttttgatccctcattttacgtgccatgt 48259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 26252408 - 26252451
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggt 197  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  26252408 cataaattacgtccctgtaatttcagattcctcccacttttggt 26252451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 33714725 - 33714630
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||| | |||| |||||||||||||||| ||||||    
T  33714725 cataaattacgtccttgtaatttcagattcctctcacttttggtctctgtaatttcagattcctccacttttggtccctcattttacgtaccatgt 33714630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 24732077 - 24732173
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  || |||||||| ||||||| | |||| |||||||||||||||| ||||||    
T  24732077 acataaattacgtccttgtaatttcagattcctcccacttttggtccctataatttcagattcctccacttttggtccctcattttacgtaccatgt 24732173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 9481322 - 9481417
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||| | |||||||||| |||||||| | |||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  9481322 cataaattacgttcctgtaatttcagattcctcctagttttggtccctgtaatttcaaattcctccattttttgtccctcattttgcgtgccatgt 9481417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 26385509 - 26385421
Alignment:
Q  161 tacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||| ||||||||||||||||||||| |||||||  ||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  26385509 tacgtccctgtaatttcatattcctcccagttttggtccctgtaatttcagattcctccacttttggtccctcattttacgtgccatgt 26385421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 30618102 - 30618196
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||| ||||||||||| |  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  30618102 cataaattacgtccctgtaatttcagattc-tcccacttttgatcactgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 30618196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 10321969 - 10321873
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcct-ctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||| || | |||||| | |||| ||||||||||||||||    
T  10321969 cataaattacgtccttgtaatttcagattcctcccacttttggttcatgtaatttcagattactccaatttttagccccttattttacgtgccatgt 10321873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 3230101 - 3230016
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcatttta 239  Q
    ||||||| |||||| |||||||||||||||||||||||||||||   |||||||||| ||||||| | |||| |||||||||||||    
T  3230101 cataaatcacgtccctgtaatttcatattcctcccacttttggtccttgtaatttcatattcctccacttttggtccctcatttta 3230016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 2299547 - 2299453
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||   |||||||| | ||||| | | |||| |||||||||||||||||||||||    
T  2299547 cataaattacgtccctgta-tttcagattcctcccacttttggtccttgtaattttagattccgccacttttggtccctcattttacgtgccatgt 2299453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 17142875 - 17142798
Alignment:
Q  155 ataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccct 232  Q
    |||||||| |||| |||||||||| ||||||| ||||||||||  ||||||||||| ||||||| | |||| ||||||    
T  17142875 ataaattaggtccctgtaatttcagattcctctcacttttggtccctgtaatttcagattcctccacttttggtccct 17142798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 32017728 - 32017679
Alignment:
Q  200 ctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||| | |||| ||||||||||||||||| |||||    
T  32017728 ctgtaatttcaaattcctccacttttggtccctcattttacgtgtcatgt 32017679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 30459139 - 30459083
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttca 210  Q
    |||||||||||||| | |||||||| ||||||||||||||||||   ||||||||||    
T  30459139 cataaattacgtccctataatttcaaattcctcccacttttggtccttgtaatttca 30459083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 33637699 - 33637742
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggt 197  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||    
T  33637699 catagattacgtccctgtaatttcagattcctcccacttttggt 33637742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 14162011 - 14162106
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  14162011 cataaattacgtccctgtaatttcagattcctcctaattttggtccctgtaatttcaaattcctccatttttggtccctcattttacgtgccatgt 14162106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 5800745 - 5800840
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  ||||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  5800745 cataaattacgtccctgtaatttcagattcctcctagttttggtccctgtaatttcaaattcctccatttttggtccctcattttacatgccatgt 5800840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 14171820 - 14171729
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||| ||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| ||||||  ||||||||||||||||||||||    
T  14171820 aattacgaccttgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccatttttgatccctcattttacgtgccatgt 14171729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 19113003 - 19112908
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||| ||| | |||| |||||||||||||||| ||||||    
T  19113003 cataaattacgtccttgtaatttcagattcctcccacttttggtccctgtaatttcagatttctccacttttggtccctcattttacgtaccatgt 19112908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 49986668 - 49986763
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||| ||||||| | |||| |||||||||||||||| ||||||    
T  49986668 cataaattacgtccttgtaatttcagattcctctcacttttggtccctgtaatttcagattcctccacttttggtccctcattttacgtaccatgt 49986763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 15328600 - 15328689
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtg 243  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||| | |||| ||| |||||||||||||    
T  15328600 cataaattacgtccctgtaatttcagattcctcccacttttggtccctgtaatttcaaattcctccacttttggtctctcattttacgtg 15328689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 43572535 - 43572620
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtg 243  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| ||| | |||| |||||||||||||||||    
T  43572535 aattacgtccctgtaatttcatattcctcccacttttggtccctgtaatttcaaattactccacttttggtccctcattttacgtg 43572620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 17465606 - 17465511
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  17465606 acataaattacgtctctgtaatttcagattcctcccacttttggtc-ctgtaatttcatattcctccacttttggtccctcattttacgtgccatgt 17465511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 30500280 - 30500184
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||||   |||||||||||||||||  | |||| |||||||||||||||||||||||    
T  30500280 acataaattacatccctgtaatttcagattcctcccacttttggtccatgtaatttcaaattccttcacttttggtccctcattttacgtgccatgt 30500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 14262274 - 14262179
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||| | |||||| ||||||||| |  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  14262274 cataaattacgtccctgtaattttagattccttccacttttgatccctgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 14262179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 21633036 - 21633131
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||||||   |||||||||| ||||||| | |||| ||||||||||||| |||||||||    
T  21633036 cataaattacgtccctgtaatttcagattcctcccacttttggtccttgtaatttcagattcctccacttttggtccctcattttatgtgccatgt 21633131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 45970055 - 45970150
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||| ||| ||| | |||| ||||||||||||||||| |||||    
T  45970055 cataaattacgtccctgtaatttcagattcctcccacttttggtccctgtaatttcagatttctccacttttggtccctcattttacgtgtcatgt 45970150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 45003637 - 45003731
Alignment:
Q  155 ataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||||||||||||| |||||||||||||||| |  ||||||||||| ||||||| | ||||  ||||||||||||| ||||||||    
T  45003637 ataaattacgtccttgtaatttcagattcctcccacttttgttccctgtaatttcatattcctccacttttgatccctcattttacatgccatgt 45003731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 33372550 - 33372635
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtg 243  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| | ||||  ||||||||||||||||    
T  33372550 aattaagtccttgtaatttcagattcctcccacttttggtctctgtaatttcatattcctccacttttgatccctcattttacgtg 33372635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 9267213 - 9267125
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgt 242  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||   |||||||||| ||||||| | |||| ||||||||||||||||    
T  9267213 cataaattaagtccttgtaatttcagattcctcccacttttggtccttgtaatttcagattcctccacttttggtccctcattttacgt 9267125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 38283689 - 38283785
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||| |||||||| |||||||| | ||||||||||||||| ||   |||||||||||||||||| | |||| |||||||||||||||||||||||    
T  38283689 acataagttacgtccctgtaatttaagattcctcccactttttgtccgtgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 38283785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 4204946 - 4204851
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| ||| | |||||||| |||||||||||| ||||| |||||||||||| ||| ||| | |||| |||||||||||||||||||||||    
T  4204946 cataaattacatccatataatttcagattcctcccactattggtctctgtaatttcatattactccacttttggtccctcattttacgtgccatgt 4204851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 20853934 - 20853839
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||| |||  |||||||||| ||||||||||||| |||| |||||||||| | ||||||| | |||| |||||||||||||||||||||||    
T  20853934 cataaattatgtcactgtaatttcagattcctcccacttctggtctctgtaattttagattcctccacttttggtccctcattttacgtgccatgt 20853839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 16722131 - 16722226
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||| |||  |||||||||| ||||||||||||| ||||  ||||||||||| ||||||| | |||| ||||||||||||||||| |||||    
T  16722131 cataaattatgtcactgtaatttcagattcctcccacttctggtccctgtaatttcagattcctccacttttggtccctcattttacgtgtcatgt 16722226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 47575510 - 47575415
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||  ||| |||||||||| |||||||||| |||| ||  ||||||||||||||||||| | ||||  ||||||||||||||||||||||    
T  47575510 cataaattatatccctgtaatttcaaattcctcccattttttgtccctgtaatttcaaattcctccacttttgatccctcattttacgtgccatgt 47575415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 35995916 - 35995821
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||||||||  || | ||||||||||||||| ||  |||||||||||  |||||| | |||| ||||||||||||||||| |||||    
T  35995916 cataaattacgtccttgtatatttagattcctcccactttttgtccctgtaatttcatgttcctccacttttggtccctcattttacgtgtcatgt 35995821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 52552926 - 52552835
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||    |||||  ||||||||||||||||||  | |||| ||||||||||||||||| |||||    
T  52552926 cataaattacgtccctgtaatttcagattcctccc----ttggtccctgtaatttcaaattccttcacttttggtccctcattttacgtgtcatgt 52552835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 11003876 - 11003936
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctc 218  Q
    |||||||||| |||||||||| ||||||||||||||||||  ||||||||||| |||||||    
T  11003876 aattacgtccctgtaatttcagattcctcccacttttggtccctgtaatttcagattcctc 11003936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 23854904 - 23854809
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||||||||| |  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  23854904 cataaattacgtccctgtaatttcagattcctcccacttttgatccctgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 23854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 17463231 - 17463326
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  ||||||||| | ||||||||| |||| |||||||||||||| ||||||||    
T  17463231 cataaattacgtccctgtaatttcagattcctcccacttttggtccctgtaattttagattcctctaattttggtccctcattttacatgccatgt 17463326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 22263429 - 22263334
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||| | |||||||  ||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  22263429 cataaattacgtccctgtaatttcagattcctcctagttttggtccctgtaatttcaaattcctccacttttggtccctcattttacgtgccatgt 22263334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 23806092 - 23806187
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  || |||||||| ||||||| | |||| |||||||||||||||||||||||    
T  23806092 cataaattacgtccctgtaatttcagattcctcccacttttggtccctataatttcagattcctccacttttggtccctcattttacgtgccatgt 23806187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 26560792 - 26560697
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| |||||||||||||||| |  ||||||||||||||||||| | ||||  ||||||||||||||||||||||    
T  26560792 cataaattacgtccctgtaatttcagattcctcccacttttgatccctgtaatttcaaattcctccacttttgatccctcattttacgtgccatgt 26560697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 42670957 - 42670862
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||| | |||||||||| |||||||| | |||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  42670957 cataaattacgttcctgtaatttcagattcctcctagttttggtccctgtaatttcaaattcctccatttttggtccctcattttacgtgccatgt 42670862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 15106211 - 15106302
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||| ||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  15106211 aattaagtccttgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttgatccctcattttacgtgccatgt 15106302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 39878242 - 39878331
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtg 243  Q
    |||||||||||||| |||||||||||||||||||||||||||||  || |||||||| ||| ||| | |||| |||||||||||||||||    
T  39878242 cataaattacgtccctgtaatttcatattcctcccacttttggtccctctaatttcagattactccacttttggtccctcattttacgtg 39878331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 17850820 - 17850729
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||| | ||||  |||||||||||| || ||||||    
T  17850820 aattacgtccttgtaatttcagattcctcccacttttggttcctttaatttcagattcctccacttttgatccctcattttaggtaccatgt 17850729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 13284647 - 13284551
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||||||||||||| | ||||||||||||||||||  ||||||||||| ||| ||  | |||| ||||||||||| ||||| |||||    
T  13284647 acataaattacgtccttgtaatttaagattcctcccacttttggtccctgtaatttcatatttcttcacttttggtccctcatttcacgtgtcatgt 13284551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 19251609 - 19251705
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| || |||||||||||| |||||||| ||||||| |  ||||||||||| ||||||| | |||| |||| ||||||||||||||||||    
T  19251609 acataaattatgttcttgtaatttcaaattcctccaacttttgatccctgtaatttcatattcctccacttttggtccatcattttacgtgccatgt 19251705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26135957 - 26136052
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||   |||||||| | ||||||| | |||| |||||| ||||||||| ||||||    
T  26135957 cataaattacgtccttgtaatttcagattcctctcacttttggtccttgtaattttagattcctccacttttggtcccttattttacgtaccatgt 26136052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 20498885 - 20498980
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||  | |||||||||||||||||||||||||||  ||||||||||| ||  ||| | ||||  ||||||||||||||||| ||||    
T  20498885 cataaattacgtcaatataatttcatattcctcccacttttggtccctgtaatttcagatcactccacttttgatccctcattttacgtgctatgt 20498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 33290189 - 33290272
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattt 237  Q
    |||||||| ||||| |||||||||| ||||||||| ||||||||  ||||||||||| || |||| | |||| |||||||||||    
T  33290189 cataaatttcgtccctgtaatttcagattcctcccccttttggtccctgtaatttcagatacctccacttttggtccctcattt 33290272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 26236281 - 26236330
Alignment:
Q  200 ctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||||||| | |||| |||||||||||||||||||||||    
T  26236281 ctgtaatttcatattcctccacttttggtccctcattttacgtgccatgt 26236330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 26236267 - 26236309
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggt 197  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  26236267 cataaattacgtccctgtaatttcatattcct-ccacttttggt 26236309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 30390651 - 30390602
Alignment:
Q  200 ctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||| ||||||  |||||| |||||||||||||||||| ||||    
T  30390651 ctgtaatttcagattccttcatttttggtccctcattttacgtgctatgt 30390602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 4703 - 4798
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| |||||||||||||||| ||||||    
T  4703 cataaattacgtccgtgtaatttcagattcctcccacttttggtccctgtaatttcagattcctccacttttggtccctcattttacgtaccatgt 4798  T

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Target: scaffold0809 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 1549 - 1645
Alignment:
Q  153 acataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||   |||||||||| ||| ||| | |||| |||||||||||||||||||||||    
T  1549 acataaattacgtccctataatttcagattcctcccacttttggtccttgtaatttcagattactccacttttggtccctcattttacgtgccatgt 1645  T

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Target: scaffold0185 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 4107 - 4011
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgtg 250  Q
    ||||||||| |||  |||||||||| ||||||||||||||||||  ||||||||||| ||||||| | |||| |||||||||||||| |||||||||    
T  4107 cataaattatgtctctgtaatttcagattcctcccacttttggtcactgtaatttcatattcctccacttttggtccctcattttacttgccatgtg 4011  T

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Target: scaffold0881 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0881
Description:

Target: scaffold0881; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 457 - 363
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    ||||||||||||| ||||||||||| |||||||||  |||||||  ||||||||||| ||||||||| |||| |||||||||||||||| ||||||    
T  457 cataaattacgtc-ttgtaatttcagattcctcccgattttggtccctgtaatttcagattcctctacttttggtccctcattttacgtaccatgt 363  T

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Target: scaffold0141 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 8467 - 8557
Alignment:
Q  158 aattacgtccttgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctctattttttgtccctcattttacgtgccatgt 249  Q
    |||||||||| |||||||||| ||||||||||||||||||   |||||||||| ||||||| |||||| || |||||||||||||| |||||    
T  8467 aattacgtccctgtaatttcagattcctcccacttttggtccttgtaatttcagattcctccatttttggt-cctcattttacgtgtcatgt 8557  T

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Target: scaffold0176 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 15856 - 15807
Alignment:
Q  169 tgtaatttcatattcctcccacttttggtttctgtaatttcaaattcctc 218  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  15856 tgtaatttcagattcctcccacttttggtctctgtaatttcaaattcctc 15807  T

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Target: scaffold0449 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 7437 - 7394
Alignment:
Q  154 cataaattacgtccttgtaatttcatattcctcccacttttggt 197  Q
    |||||||||| |||||||||||||| |||||| |||||||||||    
T  7437 cataaattacatccttgtaatttcagattcctaccacttttggt 7394  T

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