View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14331_low_2 (Length: 581)
Name: NF14331_low_2
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14331_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 31299216 - 31299052
Alignment:
| Q |
16 |
attcatacatttattttactaaaccataaaatcatactttcatgtccctctaacaaaaatatagtatttcatgtaagtagtgtttcaaattattatttga |
115 |
Q |
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| T |
31299216 |
attcatacatttattttactaaaccataatatcatactttcatgtccctctaataaaaacatagtatttcaagtaagtagtgtttcaaattattatttga |
31299117 |
T |
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| Q |
116 |
tnnnnnnntcaaagaatgaaagagtaagttaatagatagaaagaaaattaaattaacaatctaaga |
181 |
Q |
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| T |
31299116 |
t-aaaaaatcaaagaatgaaagagtaagttaatagatagaaagaaaattaaattaacaatctaaga |
31299052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 356 - 483
Target Start/End: Complemental strand, 31297639 - 31297512
Alignment:
| Q |
356 |
aaccttgttcttcctcttctatccttaattgctgaaaacaacccaaaaataaaacttaatccacacccatcgtatttgatttcacattctcaaactatcc |
455 |
Q |
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| T |
31297639 |
aaccttgttcttcctcttctatccttaattcccgaaaacaacccaacaataagacttaatccacacccatcgtattttatttcacattctcaaactatcc |
31297540 |
T |
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| Q |
456 |
catgaattatgccactgactgtgatgtt |
483 |
Q |
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| T |
31297539 |
catgaattatgccactgactgtgatgtt |
31297512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 199 - 364
Target Start/End: Complemental strand, 31299061 - 31298898
Alignment:
| Q |
199 |
caatctaagactttgttatagtctccattatttactatcaaaaagtaaaactaccaagaaaaagaaaatcacaattatttactcacaaattttataagat |
298 |
Q |
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| T |
31299061 |
caatctaagagtttgttatagtctccattatttactatcaaaaagtaacactaccaaaaaaaa--aagtctccactatttactcacaaattatataagat |
31298964 |
T |
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| Q |
299 |
actggaaaatgggtgtagaactgatgtcggtggatcggattctccgtatgaacacaaaaccttgtt |
364 |
Q |
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| T |
31298963 |
agtggaaaatgggtgtagaactgatgtcagtggatcagattctccgtatgaatacaaaaccttgtt |
31298898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 356
Target Start/End: Original strand, 32681150 - 32681179
Alignment:
| Q |
327 |
ggtggatcggattctccgtatgaacacaaa |
356 |
Q |
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| T |
32681150 |
ggtggatcggattctccgtatgaacacaaa |
32681179 |
T |
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