View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14331_low_4 (Length: 525)
Name: NF14331_low_4
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14331_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 40 - 510
Target Start/End: Complemental strand, 42162436 - 42161966
Alignment:
| Q |
40 |
aataaaacagtaatagtatgagtatactatgaatcaataataataatattacaacaacaagaactcaagaaacaagtattgaaactcatgaaattaaaga |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162436 |
aataaaacagtaatagtatgagtatactatgaatcaataataataatattacaacaacaagaactcaagaaacaagtattgaaactcatgaaattaaaga |
42162337 |
T |
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| Q |
140 |
caagtagggcaatggactaacccattctcattacacttggggcaccttatctcacccccagcatcagcagcaaccaacttacaactcccaccacaatccc |
239 |
Q |
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| T |
42162336 |
caagtagggcaatggactaacccattctcattacacttggggcaccttatctcacccccagcatcagaagtaaccaacttacaactcccaccacaatccc |
42162237 |
T |
|
| Q |
240 |
aacaaggaacaaatctaaccccaccacatccaacacacccttgtcttccaacacctctctccacacgtgtcgcattcagtatcctcccaagtcgacccgt |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162236 |
aacaaggaacaaatctaaccccaccacatccaacacacccttgtcttccaacacctctctccacacgtgtcgcattcagtatcctcccaagtcgacccgt |
42162137 |
T |
|
| Q |
340 |
ttcattaagctccatcaactcatccaacccacccaaatacctacccttcacaaacacccttggcaaaaccacaccaacccctaactcttcctccgttaat |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162136 |
ttcattaagctccatcaactcatccaacccacccaaatacctacccttcacaaacacccttggcaaaaccacaccaacccctaactcttcctccgttaat |
42162037 |
T |
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| Q |
440 |
aacaactccttcacttcctttaaaaactctccatgaagtgccacgtcacgttcatcaaatacaaccctatg |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162036 |
aacaactccttcacttcctttaaaaactctccatgaagtgccacgtcacgttcatcaaatacaaccctatg |
42161966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42162500 - 42162461
Alignment:
| Q |
1 |
caaacatgtactcaacatatacatatactacacttgagaa |
40 |
Q |
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| T |
42162500 |
caaacatgtactcaacatatacatatactacacttgagaa |
42162461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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