View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14331_low_6 (Length: 496)
Name: NF14331_low_6
Description: NF14331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14331_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 480
Target Start/End: Complemental strand, 32189965 - 32189499
Alignment:
| Q |
14 |
gaagcataggcatggaaacatcgacccaaaggcaacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaaccaaggcttcaaggtaggaatt |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32189965 |
gaagaataggcatggaaacatcgacccaaaggcaacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaactaaggcttcaaggtaggaatt |
32189866 |
T |
|
| Q |
114 |
agagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcactgaagttgatttttcgcgaaaatcattggatgtgaactctatgttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189865 |
agagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcgctgaagttgatttttcgcgaaaatcattggatgtgaactctatgttg |
32189766 |
T |
|
| Q |
214 |
gggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189765 |
gggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgt |
32189666 |
T |
|
| Q |
314 |
ctgagttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacattttcttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189665 |
ctgagttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacattttcttt |
32189566 |
T |
|
| Q |
414 |
ttgaatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagggttgtctaatt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189565 |
ttgaatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagggttgtctaatt |
32189499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University