View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_10 (Length: 412)
Name: NF14332_high_10
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 15306965 - 15306554
Alignment:
| Q |
1 |
aacggacctcactacatggcaccaaaggccactgaatccaacaataatttggaggctagaggcaacaataagcgcaccttgcgttccacgcataatcctc |
100 |
Q |
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| T |
15306965 |
aacggacctcactacatggcaccaaaggccactgaatccaacaataatttggaggctagaggcaacaataagcgcaccttgcgttccacgcataatcctc |
15306866 |
T |
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| Q |
101 |
ttaaatttctgcacattgatcacaaatcagatagccagaaaaggctgttgatataccaaaaaagacaaaacaatgaaaaatacaaggtttgtgatgaacc |
200 |
Q |
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| T |
15306865 |
ttaaatttctgcacattgatcacaaatcagatagccagaaaaggctgttgatataccaaaaaagacaaaacaatgaaaaatacaaggtttgtgatgaacc |
15306766 |
T |
|
| Q |
201 |
aacctcccgaggatgcataatatcattgtcgtagcgactggccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccaataactgctggt |
300 |
Q |
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| T |
15306765 |
aacctcccgaggatgcataatgtcatcgtcgtagcgactggccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccgataactgctggt |
15306666 |
T |
|
| Q |
301 |
agtcgagtcccaaacaatgtttgtattaatgtgtttataccagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaacacaaatt |
400 |
Q |
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| T |
15306665 |
agtcgagtcccaaacaatgtttgtattaatgtgtttataccagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaacacaaatt |
15306566 |
T |
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| Q |
401 |
aagctatttgtt |
412 |
Q |
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| T |
15306565 |
aagctatttgtt |
15306554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 394
Target Start/End: Original strand, 26475051 - 26475204
Alignment:
| Q |
241 |
gccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcccaaacaatgtttgtattaatgtgtttatac |
340 |
Q |
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||||| || |||||||| || ||||||||||| || |||||||||||||||| || ||||| ||||| ||||| |||||| | |||||||| || | |
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| T |
26475051 |
gccaaaataattgaaatagttgttggcacaaaagtgtaggatcctccaataaccgcaggtagacgagttccaaatgttgtttggaaaaatgtgttaattc |
26475150 |
T |
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| Q |
341 |
cagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaaca |
394 |
Q |
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| T |
26475151 |
cagccacaaatagtagagtctgaatcacttttgctttctcttcctattgaaaca |
26475204 |
T |
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