View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_11 (Length: 409)
Name: NF14332_high_11
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 26323231 - 26323622
Alignment:
| Q |
18 |
atacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatctccaaagcttagggtttaagagaattgttgtagg |
117 |
Q |
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| T |
26323231 |
atacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatctccaaagcttagggtttaagagaattgttgtagg |
26323330 |
T |
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| Q |
118 |
tgctttacaaccacttggatgtcttcctcaaaccactgctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaac |
217 |
Q |
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| T |
26323331 |
tgctttacaaccacttggatgtcttcctcaaaccactgctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaac |
26323430 |
T |
|
| Q |
218 |
ctattgaaccaatccgtggccaaattgaaccaagaaaccaaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaacc |
317 |
Q |
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| T |
26323431 |
ctattgaaccaatccgtggccaaattgaaccaagaaaccaaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaacc |
26323530 |
T |
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| Q |
318 |
accctgcaagccataatatcaaggatcatttgaagccatgttgcgcgggagtaagcagtcagtataattgtggaagtgtagacgagaataat |
409 |
Q |
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| T |
26323531 |
accctgcaagccataatatcaaggatcatttgaagccatgttgcgcgggagtaagcagtcagtataattgtggaagtgtagacgagaataat |
26323622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 32 - 399
Target Start/End: Original strand, 26329353 - 26329720
Alignment:
| Q |
32 |
ccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatctccaaagcttagggtttaagagaattgttgtaggtgctttacaaccac |
131 |
Q |
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| T |
26329353 |
ccatctttcattgaatcagtgattgaacaaacaaccaccaatttgattcatcttcaaagcttaggatttgagagaattgttgtgggtgctttacaacccc |
26329452 |
T |
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| Q |
132 |
ttggatgtcttcctcaaaccactgctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaacctattgaaccaatc |
231 |
Q |
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|||| |||||||||||| | ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
26329453 |
ttggttgtcttcctcaagcaactgctgaaacctcattccaaagttgcaatagtacatttaacgacctcgtagctctccacaataacctattgaaccaatc |
26329552 |
T |
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| Q |
232 |
cgtggccaaattgaaccaagaaaccaaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaaccaccctgcaagccat |
331 |
Q |
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| T |
26329553 |
tgttacaaagttaaatcaagaaaccaatgatcacaccacattcacaattctagacattttcgatagtttcaagtcagtgttgaatcacccttctagccat |
26329652 |
T |
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| Q |
332 |
aatatcaaggatcatttgaagccatgttgcgcgggagtaagcagtcagtataattgtggaagtgtaga |
399 |
Q |
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| T |
26329653 |
aacattaaggaacgtttgaaaccatgttgcgtcggagtaagcagtgagtataagtgtggaagtgtaga |
26329720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 22 - 399
Target Start/End: Original strand, 26336656 - 26337033
Alignment:
| Q |
22 |
gcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatctccaaagcttagggtttaagagaattgttgtaggtgct |
121 |
Q |
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||||||||| |||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||| | |
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| T |
26336656 |
gcagggtttcccatcttttattgaatcagtgattaaacaaacaaccactaatttgattcatctccaaagtttaggatttaagagaattgttgtgggtgat |
26336755 |
T |
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| Q |
122 |
ttacaaccacttggatgtcttcctcaaaccactgctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaacctat |
221 |
Q |
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| T |
26336756 |
ttacaacctcttggttgtcttcctcaagccactgctcaaaactcatttcaaagttgcaatagtacatttaatgaccttgtagctctccgcaacaatctaa |
26336855 |
T |
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| Q |
222 |
tgaaccaatccgtggccaaattgaaccaagaaaccaaggatcacaccacctttacaattctagacatttttgacagttttgcgtcggtgttgaaccaccc |
321 |
Q |
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|||| ||||| | | || ||||||||||||||||| ||||||||||| || ||||| |||| | |||| || ||||| |||||||||||| ||||| |
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| T |
26336856 |
tgaaacaatctattacaaagttgaaccaagaaaccaaagatcacaccacattcacaatcctaggccttttcgatagtttcaggtcggtgttgaatcaccc |
26336955 |
T |
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| Q |
322 |
tgcaagccataatatcaaggatcatttgaagccatgttgcgcgggagtaagcagtcagtataattgtggaagtgtaga |
399 |
Q |
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| T |
26336956 |
ttcaagccataacattaaggaacgtttgaagccatgttgcatcggagtaagcgatgagtatacttatggaagtgtaga |
26337033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 26343013 - 26343227
Alignment:
| Q |
17 |
aatacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatctccaaagcttagggtttaagagaattgttgtag |
116 |
Q |
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|||||||||||||| |||||||| |||| |||||| |||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
26343013 |
aatacgcagggtttcccatcttttattgaatcagtgattaaccaaacaaccaccaatttgattcatcttcaaagcttaggatttaagagaattgttgtgg |
26343112 |
T |
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| Q |
117 |
gtgctttacaaccacttggatgtcttcctcaaaccactgctgaatcctcgttccaacgttgcaatagtacatttaacgacctcgtagctctccataacaa |
216 |
Q |
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||| ||||||||| |||||||||||||||||| |||| ||| || |||| || || ||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
26343113 |
gtgatttacaacctcttggatgtcttcctcaagccaccgctcaaacctcatttcagagttgcaatagtacatttaatgaccttgtagctctccacaacaa |
26343212 |
T |
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| Q |
217 |
cctattgaaccaatc |
231 |
Q |
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|||||||||||||| |
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| T |
26343213 |
tctattgaaccaatc |
26343227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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