View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_13 (Length: 387)
Name: NF14332_high_13
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 2245807 - 2245441
Alignment:
| Q |
1 |
agccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactcctctgtatagcttcttcttacaagggt |
100 |
Q |
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| T |
2245807 |
agccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactcctctgtatagcttcttcttacaagggt |
2245708 |
T |
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| Q |
101 |
tcattaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaagggtttagtagagatagagattgatttgaaaatgaagacggaac |
200 |
Q |
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| T |
2245707 |
tcaccaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaaggggttagtagagat------tgatttgaaaatgaagaaggaac |
2245614 |
T |
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| Q |
201 |
gaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggtaaacagaggaacctaaaggttcaaaatttgaacagccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245613 |
gaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggtaaacagaggaacctaaaggttcaaaatttgaacagccc |
2245514 |
T |
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| Q |
301 |
aagaaggttgtgctgtctgtggtggtgtttgttgaaggaatatctgagaaaagagagtcaagggtgtttgttg |
373 |
Q |
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| T |
2245513 |
aagaaggttgtgctgtctgtggtggtgtttgttgaaggaatatctgagaaaatagagtcaagtgtgtttgttg |
2245441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 33469963 - 33469896
Alignment:
| Q |
19 |
ttctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactcctctgtatagctt |
86 |
Q |
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| T |
33469963 |
ttcttaggtagtcttatctcagcaacccattttccccagtgcctttgtctcactcctctgtatagctt |
33469896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 33719007 - 33718963
Alignment:
| Q |
33 |
aatctcagccacccattttccccagtgtctctgtctcactcctct |
77 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
33719007 |
aatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
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