View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_15 (Length: 358)
Name: NF14332_high_15
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 4 - 340
Target Start/End: Original strand, 34689950 - 34690286
Alignment:
| Q |
4 |
taacataggtttggatagttgttgttgccatatgtcgctatttttgaatgacttagatcaaattgaaatatttgtttaaaagctaattcctgattcagtg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689950 |
taacatagatttggatagttgttgttgccatatgtcgctatttttgaatgacttagatcaaattgaaatatttgtttaaaagctaattcctgattcagtg |
34690049 |
T |
|
| Q |
104 |
atcatgcccaacaagtattcctgatatataagcatacagctgaatggttggttaaggatggcaaggtagtgtcggtcctcgtacatgctaaccgcactgc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34690050 |
atcatgcccaacaagtattcctgatatataagcatacagctgaatggttggttaaggatggcaaggtagtgtcggtcctcgcacatgctaaccgcactgc |
34690149 |
T |
|
| Q |
204 |
aacaaagaagttccataagtaaatataaacattgagcctataaaagtacaccacaataaggcattacgaattaaattggttcttgtgttcaaatctttaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34690150 |
aacaaagaagttccataagtaaatataaacattgagcctataaaagtacaccacaataaggcattacgaattaaattggttcttgtgttcaaatctttaa |
34690249 |
T |
|
| Q |
304 |
atcgaatccataacacggtaattccctatggacttac |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
34690250 |
atcgaatccataacacggtaattccctatggacttac |
34690286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 63 - 247
Target Start/End: Original strand, 16728462 - 16728652
Alignment:
| Q |
63 |
aaattgaaatatttgtttaaaagctaattcctgattcagtgatcatgcccaacaagtattcctgatatataagcatacagctgaatggttggttaaggat |
162 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
16728462 |
aaattgaaatatttgtttaagagctaattcctgattcagtgatcatgcccaacaagtattcctgatatataagcatacagctaaatggttggttaaggat |
16728561 |
T |
|
| Q |
163 |
ggca--aggtagtgtcggtcctcgtacatgctaaccgcactgcaacaaagaagttccataag----taaatataaacattgagcctataaa |
247 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||| ||||||| |
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|
| T |
16728562 |
ggcaataggtagtgtcggtcctcgtacatgctaaccgcacgacaacaaagaaattccataagtaattaaatataaacatcgagtctataaa |
16728652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 16728651 - 16728719
Alignment:
| Q |
272 |
aattaaattggttcttgtgttcaaatctttaaatcgaatccataacacggtaattccctatggacttac |
340 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16728651 |
aattaaatttgttcttgtgttcaaatctttaaatcgaatccataacacggtaattccctatggacttac |
16728719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 26987902 - 26988214
Alignment:
| Q |
4 |
taacataggtttggatagttgttgttgccatatgtcgctatttttgaatgacttagatcaaattgaaatatttgtttaaaagctaattcctgattcagtg |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26987902 |
taacatagatttggatagttgttgttgccacatgtcgctatttc------aatt-gatcaaattgaaatatttgtttaaaagctgattcctgattcagtg |
26987994 |
T |
|
| Q |
104 |
atcatgcccaacaagtattcctgatatataagcatacagctgaatggttggttaaggatggcaa--ggtagtgtcggtcctcgtacatgctaaccgcact |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
26987995 |
atcatgcccaacaagtattcctgatatataagcatacagctgaatggttggttaaggatggcaataggtagtgtcggtcctcgtacatgctaaccgcatt |
26988094 |
T |
|
| Q |
202 |
gcaacaaagaagttccataagtaaatataaacattgagcctataaaagtacaccacaataaggcattacgaattaaattggttcttgtgttcaaatcttt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
26988095 |
gcaacaaagaagttccataagtaaatataaacattgagcctataaaagtacaccacaataaggcattacaaattaaatttgttcttgtgttcaaatcttt |
26988194 |
T |
|
| Q |
302 |
aaatcgaatccataacacgg |
321 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26988195 |
gaatcgaatccataacacgg |
26988214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 27027378 - 27027493
Alignment:
| Q |
4 |
taacataggtttggatagttgttgttgccatatgtcgctatttttgaatgac--ttagatcaaattgaaatatttgtttaaaagctaattcctgattcag |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||| |
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| T |
27027378 |
taacatagatttggatagttgttgttgccacatgtcgctatttttgaatgactgttagattaagt-----tatttgtttaaaagctaattcctgattcag |
27027472 |
T |
|
| Q |
102 |
tgatcatgcccaacaagtatt |
122 |
Q |
| |
|
||| | ||||||||||||||| |
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|
| T |
27027473 |
tgaccgtgcccaacaagtatt |
27027493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 27077384 - 27077260
Alignment:
| Q |
4 |
taacataggtttggatagttgttgttgccatatgtcgctattttt---gaatgact--tagatcaaattgaaatatttgtttaaaa-gctaattcctgat |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||| || |||||||| |||||||| |||||||||||||| |||| ||||||||||| | |
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| T |
27077384 |
taacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgttaaaaaagctaattcctgct |
27077285 |
T |
|
| Q |
98 |
tcagtgatcatgcccaacaagtatt |
122 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
27077284 |
tcagtggtcatgcccaacaagtatt |
27077260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 27077172 - 27077104
Alignment:
| Q |
196 |
cgcactgcaacaaagaagttccataagtaaatataaacattgagcctataaaagtacaccacaataagg |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
27077172 |
cgcactgtaacaaagaagttccataagtaaatataaacatttagcctatagaagtatgtcacaataagg |
27077104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 30230476 - 30230570
Alignment:
| Q |
224 |
aaatataaacattgagcctataaaagtacaccacaataaggcattacgaattaaattggttcttgtgttcaaatctttaaatcgaatccataaca |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
30230476 |
aaatataaacattgagcctattgaagtacaccagaataaggcattacaaattaaatttggtcttgtgttcaaatctttaaatcgaatccataaca |
30230570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 30230277 - 30230376
Alignment:
| Q |
8 |
ataggtttggatagttgttgttgccatatgtcgctatttttgaatgact--tagatcaaattgaaatatttgtttaaaagctaattcctgattcagtgat |
105 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||||| |||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30230277 |
atagatttggatagttgttgtttccgcatgtcgctattttcgaatgaatgttagatcaagttgaaatatttgttaaaaagctaattcctgattcagtgat |
30230376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 30232997 - 30233108
Alignment:
| Q |
13 |
tttggatagttgttgttgccatatgtcgctatttttgaatgact--tagatcaaattgaaatatttgtttaaaagctaattcctgattcagtgatcatgc |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||| || ||||| ||||||||||| || ||||||||||| ||||||||||||||||| |
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|
| T |
30232997 |
tttggatagttgttgttgccgcatgtcgcaattttctaatgactcttaaatcaagttgaaatatttattaaaaagctaatttatgattcagtgatcatgc |
30233096 |
T |
|
| Q |
111 |
ccaacaagtatt |
122 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30233097 |
ccaacaagtatt |
30233108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 30233273 - 30233322
Alignment:
| Q |
181 |
ctcgtacatgctaaccgcactgcaacaaagaagttccataagtaaatataaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
30233273 |
ctcgtacatgctaaccgcactgcaac--acaagttccttaagtaaatataaa |
30233322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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