View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_17 (Length: 352)
Name: NF14332_high_17
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 5677186 - 5676861
Alignment:
| Q |
18 |
ctccataggtagaaatctccttgtttgcaaaagaaaagaagaacacaattactatgattgtagtatataagatacatgttttgaaaaatgcgaacattaa |
117 |
Q |
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| T |
5677186 |
ctccataggtagaaatctcct-gtttgcaaaagaaaagaagaacacaattactatgattgcagtatataagatacatgttttgaaaaatgcgaacattaa |
5677088 |
T |
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| Q |
118 |
ttagacctttatacactcaaaagcattgtaacttagcttttcttttcttgagattcaatccttaattcttaataattttttcttttgttcgagcaggata |
217 |
Q |
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| T |
5677087 |
ttagacctttatacactcaaaagcattgtaacttagcttttcttttcttgagattcaatccttaattcttaataattttttctttctttcgagcaggata |
5676988 |
T |
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| Q |
218 |
tatttggaaagggaaggaagaaaattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgc |
317 |
Q |
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| T |
5676987 |
tatttggaaagggaaggaagaagattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgc |
5676888 |
T |
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| Q |
318 |
aatgtcagtaagctttctatctgtgct |
344 |
Q |
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| T |
5676887 |
aatgtcagtaagctttctatctatgct |
5676861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 39778829 - 39778956
Alignment:
| Q |
208 |
gagcaggatatatttggaaagggaaggaagaaaattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaag |
307 |
Q |
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| T |
39778829 |
gagcaggagatatttggaaagggaaggaaggatatagaagcacatgaagagcatgagaagagacttattttagagatactagtgagccttatgccaaggg |
39778928 |
T |
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| Q |
308 |
agaagaatgcaatgtcagtaagctttct |
335 |
Q |
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| T |
39778929 |
agaagaatgcaatatctgtcagctttct |
39778956 |
T |
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