View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_18 (Length: 347)
Name: NF14332_high_18
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 27444092 - 27444405
Alignment:
| Q |
21 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaaatatgcc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
27444092 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaaatatgcc |
27444191 |
T |
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| Q |
121 |
gtcttaattaatttttgttaatttttgtcnnnnnnnnnnnntaagtgcatgtatacaaatgaaacatatacagacacatttgtcatgtaatataaaccac |
220 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
27444192 |
gtcttaattaatttttgttaatttttgtcaaaaataaaa--taagtgcatgtatacaaatgaa-cgtatacagacacatttgtcatgtaatataaaccac |
27444288 |
T |
|
| Q |
221 |
aagtattttcaattattattgcagtaannnnnnnataatttattgtcttgatgggtgtattatataggttatgctccttatgtcgtcatcagcatttaat |
320 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27444289 |
aagtattttcaattattattgcagtaatttttttataatttattgtcttgatgggtttattatataggttatgctccttatgtcgtcatcagcatttaat |
27444388 |
T |
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| Q |
321 |
cttgtcctttttctgtg |
337 |
Q |
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||||||||||||||||| |
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| T |
27444389 |
cttgtcctttttctgtg |
27444405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 27432518 - 27432298
Alignment:
| Q |
21 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaaatatgcc |
120 |
Q |
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| T |
27432518 |
tacgacgataagagcagcactttcacttgctttgcaagacccgattacgccatcaccttctgcccatcaaattaaacttcacgatcaaacaaaatatgcc |
27432419 |
T |
|
| Q |
121 |
gtcttaattaatttttgttaatttttgtcnnnnnnnnnnnntaagtgcatgtatacaaatgaaacatatacagacacatttgtcatgtaatataaaccac |
220 |
Q |
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|||||||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27432418 |
gtcttaattaatttatgtc----tttgtcaaaaataaaa--taagtgcatgtatacaaatgaaacgtatacagacacatttgtcatgtaatataaaccac |
27432325 |
T |
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| Q |
221 |
aagtattttcaattattattgcagtaa |
247 |
Q |
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||||||||||||||||||||||||||| |
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| T |
27432324 |
aagtattttcaattattattgcagtaa |
27432298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 27220771 - 27220679
Alignment:
| Q |
21 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
27220771 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27220679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 27214809 - 27214717
Alignment:
| Q |
21 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaacaccatcagcaaacaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
27214809 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27214717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 27207438 - 27207362
Alignment:
| Q |
21 |
tacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaac |
97 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
27207438 |
tacgacgataagagcagcattttcacttgctttgcaagacccgactatgcaatcaccttctgcccatcagcttgaac |
27207362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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