View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14332_high_2 (Length: 664)
Name: NF14332_high_2
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_2 |
 | |
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| [»] chr3 (15 HSPs) |
| |
|
| [»] scaffold1215 (1 HSPs) |
| | |
|
| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 19 - 664
Target Start/End: Complemental strand, 34474149 - 34473504
Alignment:
| Q |
19 |
tgctgatcttgtgattcatatgatttaaatgtaacatagctcactttcagggtaggtgaattttattcttaattatgtaactcaattcgttgtgttaata |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34474149 |
tgcttatcttgtgattcatatgatttaaatgtaacatagctcactttcagggtaggtgaattttattcttaattatgtaactcaattcgttgtgttaata |
34474050 |
T |
|
| Q |
119 |
tatcgatgtatactttctacatggcgcatttgaaactcgcagaaaaacggtgtctccgatgttgattgggcattgcatgacaagataccatcagtaatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34474049 |
tatcgatgtatactttctacatggcgcatttgaaactcgcggaaaaacggtgtctccgatgttgattgggcattgcatgacaagataccatcagtaatgt |
34473950 |
T |
|
| Q |
219 |
atatttgggacaatgtatatgttccaagctcatgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttcca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473949 |
atatttgggacaatgtatatgttccaagctcatgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttcca |
34473850 |
T |
|
| Q |
319 |
ttggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473849 |
ttggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttc |
34473750 |
T |
|
| Q |
419 |
actgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473749 |
actgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagt |
34473650 |
T |
|
| Q |
519 |
acatttctcaattatctgtcgatctacaggatatcccaacttattcaattcagccacttctctgatgttctcattccaaactcttcccttctctcaacta |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
34473649 |
acatttctcaattatctgtcgatctacaggatatcccaacttattcaattcagccacttctctgatgttttcattccaaacacttcccttctctcaacta |
34473550 |
T |
|
| Q |
619 |
cggtggttgcttttcttcccttctattcttcattttcttctttccc |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473549 |
cggtggttgcttttcttcccttctattcttcattttcttctttccc |
34473504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 225 - 553
Target Start/End: Original strand, 34372642 - 34372972
Alignment:
| Q |
225 |
gggacaatgtatatgttccaagctc--atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattgg |
322 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||| | |||||||||||| ||||||||| ||| |||| | |
|
|
| T |
34372642 |
gggacaatgtatatgttccaagctccaacgagtttttctcagatgaagataccatcagtgatgcctcagacgttactgatgcaaatgatattctcattcg |
34372741 |
T |
|
| Q |
323 |
aaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactg |
422 |
Q |
| |
|
||||||||||||||||||| || |||| ||||||||||||| | | ||||||||| |||||||||||||||| |||| |||||||||| | |||| || |
|
|
| T |
34372742 |
aaaaaggtatgatcctgcttttggataatttataaatatcaattgtactcatgagtgaaaatgtctatctgaaattaagatcattgtaaattattcattg |
34372841 |
T |
|
| Q |
423 |
ttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacat |
522 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
34372842 |
ttctctacatttaataaaaatattgcttcttgtggtatggaaaattatgcacctgatggtgttaccatggatttccaaattattgtactttacagtacat |
34372941 |
T |
|
| Q |
523 |
ttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |
|
|
| T |
34372942 |
ttctcagttatctgcggatctacaggatatc |
34372972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 287 - 553
Target Start/End: Complemental strand, 34467876 - 34467610
Alignment:
| Q |
287 |
ctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgt |
386 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||| ||| ||||||||||| | || ||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
34467876 |
ctcagacgataccgttgcaaaaggcatttccattggagaaaagtatgatcctgttcttggatatgttataaatatcaactatgctcatgagggaaaatgc |
34467777 |
T |
|
| Q |
387 |
ctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgtta |
486 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||| |||| |||||||| | ||||||||||| |||||||||| |||||||| || |||| ||||||||| |
|
|
| T |
34467776 |
ctatctgaatttaatatcgttgttactcattcattgttctctacatttaataaaaatattgtttcttgtggtatggaaaatcatatacctaatggtgtta |
34467677 |
T |
|
| Q |
487 |
tcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |||||||||||| ||| ||| |||||||| |||||| |
|
|
| T |
34467676 |
ccatagatttccagattattgtactttatattacatttctcaactatttgtggatctacatgatatc |
34467610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 383 - 553
Target Start/End: Complemental strand, 27625951 - 27625781
Alignment:
| Q |
383 |
atgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggt |
482 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||| |
|
|
| T |
27625951 |
atgtctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggt |
27625852 |
T |
|
| Q |
483 |
gttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
27625851 |
gttaccatagatttccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc |
27625781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 383 - 553
Target Start/End: Complemental strand, 34511724 - 34511554
Alignment:
| Q |
383 |
atgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggt |
482 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||| |
|
|
| T |
34511724 |
atgtctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggt |
34511625 |
T |
|
| Q |
483 |
gttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
| || || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
34511624 |
gctaccatagatttccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc |
34511554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 230 - 545
Target Start/End: Complemental strand, 34477881 - 34477572
Alignment:
| Q |
230 |
aatgtatatgttccaagctc--atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaa |
327 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||| |||||| ||||||||||||| |||||||| | | | || ||| ||||||||| |||| || |
|
|
| T |
34477881 |
aatgcatatgttccaagcttcgatgattttttctcagatgacgataccatcagtaatgcctcagacgctgctgttgaaaaaggcatttccagcggaataa |
34477782 |
T |
|
| Q |
328 |
ggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatc |
427 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||| ||| || | |||| ||||| |||||||||| |||||| || |||||||| | || |
|
|
| T |
34477781 |
ggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttctatctgaatttaataacagtgtaactcatc--------tc |
34477690 |
T |
|
| Q |
428 |
tacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctc |
527 |
Q |
| |
|
|||| | | ||||| |||||||||||||||| | |||||||||| ||| |||||||||| || |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
34477689 |
tacagttaataaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctc |
34477590 |
T |
|
| Q |
528 |
aattatctgtcgatctac |
545 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
34477589 |
aattatctgtggatctac |
34477572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 34512025 - 34511918
Alignment:
| Q |
91 |
ttatgtaactcaattcgttgtgttaatatatcgatgtatactttctacatggcgcatttgaaactcgcagaaaaacggtgtctccgatgttgattgggca |
190 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||| |||||||||||| ||||| ||| ||| ||| |||||||||||||||| |||| |||||||| |
|
|
| T |
34512025 |
ttatgtaacttaattcattttgttaatataatgatgtgtactttctacatagcgcaattggaacacgcggaaaaacggtgtctccattgttcattgggca |
34511926 |
T |
|
| Q |
191 |
ttgcatga |
198 |
Q |
| |
|
|||||||| |
|
|
| T |
34511925 |
ttgcatga |
34511918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 34376094 - 34376196
Alignment:
| Q |
311 |
catttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgta |
410 |
Q |
| |
|
||||||| |||||||||||||||| | || | || ||||| ||||||||||||| ||| ||||||||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
34376094 |
catttcccttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcatgagtgaaaatttctatcttaatttaatatcattgta |
34376193 |
T |
|
| Q |
411 |
act |
413 |
Q |
| |
|
||| |
|
|
| T |
34376194 |
act |
34376196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 226 - 400
Target Start/End: Complemental strand, 34462819 - 34462643
Alignment:
| Q |
226 |
ggacaatgtatatgttccaagctc--atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattgga |
323 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||||||| ||||||||| | | || ||| ||||||||| ||| |
|
|
| T |
34462819 |
ggacaatgcatatgttccaagctttgatgattttttctcagatgaagataccatcagtaatgcttcagacgttcctgttgaaaaaggcatttccaacgga |
34462720 |
T |
|
| Q |
324 |
aaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaa |
400 |
Q |
| |
|
|||||||||||| || | || ||||||||||||||||||| ||| |||| || ||||| |||||||||| |||| |
|
|
| T |
34462719 |
aaaaggtatgatgttgttcttggatatgttataaatatcaactatactcacgatagaaaatttctatctgaatttaa |
34462643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 27626047 - 27625962
Alignment:
| Q |
253 |
agtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcct |
338 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||| | |||| |||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
27626047 |
agtttttctcagatgaagataccatcagtaatgcctcagatgataccattgcaaaaggcattaccattggaaaaaggtataatcct |
27625962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 34511820 - 34511735
Alignment:
| Q |
253 |
agtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcct |
338 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||| | |||| |||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
34511820 |
agtttttctcagatgaagataccatcagtaatgcctcagatgataccattgcaaaaggcattcccattggaaaaaggtataatcct |
34511735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 27626253 - 27626155
Alignment:
| Q |
91 |
ttatgtaactcaattcgttgtgttaatatatcgatgtatactttctacatggcgcatttgaaactcgcagaaaaacggtgtctccgatgttgattgggc |
189 |
Q |
| |
|
|||||||||| ||||| || | |||||||| ||||| |||||||||||| ||||| ||| ||| ||| ||||||| ||| |||| |||| ||||||| |
|
|
| T |
27626253 |
ttatgtaacttaattcattttcttaatataatgatgtgtactttctacatagcgcaattggaacccgcggaaaaacagtgcctccattgttcattgggc |
27626155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 27632739 - 27632627
Alignment:
| Q |
91 |
ttatgtaactcaattcgttgtgttaatatatcgatgtatactttctacatggcgcatttgaaactcgcagaaaaacggtgtctccgatgttgattgggca |
190 |
Q |
| |
|
|||| |||| |||||| || || | ||||| |||||||| |||||||||| | | ||||| ||| | | || |||||| ||||| ||||| |||||| | |
|
|
| T |
27632739 |
ttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtctcacatgttcattgggaa |
27632640 |
T |
|
| Q |
191 |
ttgcatgacaaga |
203 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27632639 |
ttgcatgacaaga |
27632627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 34489222 - 34489126
Alignment:
| Q |
96 |
taactcaattcgttgtgttaatatatcgatgtatactttctacatggcgcatttgaaactcgcagaaaaacggtgtctccgatgttgattgggcatt |
192 |
Q |
| |
|
||||||||||| | |||| ||||| |||| ||| ||||||||| ||| ||||| ||| ||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
34489222 |
taactcaattcaatatgttgatataatgatgcataatttctacatagcggatttggaacccgcggaaaaacggtatctcgaacgttgattgggcatt |
34489126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 34517531 - 34517419
Alignment:
| Q |
91 |
ttatgtaactcaattcgttgtgttaatatatcgatgtatactttctacatggcgcatttgaaactcgcagaaaaacggtgtctccgatgttgattgggca |
190 |
Q |
| |
|
|||| |||| |||||| || || | ||||| |||||||| |||||||||| | | ||||| ||| | | || |||||| ||||| ||||| |||||| | |
|
|
| T |
34517531 |
ttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtctcacatgttcattgggaa |
34517432 |
T |
|
| Q |
191 |
ttgcatgacaaga |
203 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34517431 |
ttgcatgacaaga |
34517419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 225 - 553
Target Start/End: Complemental strand, 671 - 341
Alignment:
| Q |
225 |
gggacaatgtatatgttccaagctc--atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattgg |
322 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
671 |
gggacaatgtatatgttccaagctccaacgagtttttctcagatgaagataccttcagtgacgcctcagacattaccgatgcaaatgacattcccattgg |
572 |
T |
|
| Q |
323 |
aaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactg |
422 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||||| | | ||||||||| ||||| |||||||||||||||||| |||||||||| | || || |
|
|
| T |
571 |
aaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattgtaactcatccattg |
472 |
T |
|
| Q |
423 |
ttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacat |
522 |
Q |
| |
|
|| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||||| |
|
|
| T |
471 |
ttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgataccatagatttccaaattattgtactttacaatacat |
372 |
T |
|
| Q |
523 |
ttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
|||||| ||||||| |||||||| |||||| |
|
|
| T |
371 |
ttctcagttatctgcagatctacaagatatc |
341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 225 - 553
Target Start/End: Complemental strand, 10526677 - 10526347
Alignment:
| Q |
225 |
gggacaatgtatatgttccaagctc--atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattgg |
322 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
10526677 |
gggacaatgtatatgttccaagctccaacgagtttttctcagatgaagataccttcagtgacgcctcagacattaccgatgcaaatgacattcccattgg |
10526578 |
T |
|
| Q |
323 |
aaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactg |
422 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||||| | | ||||||||| ||||| |||||||||||||||||| |||||||||| | || || |
|
|
| T |
10526577 |
aaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattgtaactcatccattg |
10526478 |
T |
|
| Q |
423 |
ttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacat |
522 |
Q |
| |
|
|| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||||| |
|
|
| T |
10526477 |
ttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgataccatagatttccaaattattgtactttacaatacat |
10526378 |
T |
|
| Q |
523 |
ttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
|||||| ||||||| |||||||| |||||| |
|
|
| T |
10526377 |
ttctcagttatctgcagatctacaagatatc |
10526347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 225 - 553
Target Start/End: Complemental strand, 10533486 - 10533169
Alignment:
| Q |
225 |
gggacaatgtatatgttccaagctc--atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattgg |
322 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||| ||||||| ||||||||||| | ||||||| | | |||||||||| |||| ||||||| |
|
|
| T |
10533486 |
gggacaatgtatatgtaccaagctccaacgagtttttctcagatgaagataccatcagtgatgcctcagacatcagcgatgcaaatgacattcccattgg |
10533387 |
T |
|
| Q |
323 |
aaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactg |
422 |
Q |
| |
|
||||||||||||||||||| || |||| |||||||||||||| | | |||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10533386 |
aaaaaggtatgatcctgcttttggataagttataaatatcaactgtactcacgagtgaaaatgtctatctgaagttaatatcattgtaac---------- |
10533297 |
T |
|
| Q |
423 |
ttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacat |
522 |
Q |
| |
|
||| |||| | |||||||||||||||||||||| |||||||||| ||||||||||| |||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
10533296 |
---tctgcatttaataaaaatattgcttcttgtggtatggaaaattaggcacctgatggcgttacgatagatttccaaattattgtactttacagtacat |
10533200 |
T |
|
| Q |
523 |
ttctcaattatctgtcgatctacaggatatc |
553 |
Q |
| |
|
||||| ||||||| |||||||| |||||| |
|
|
| T |
10533199 |
ttctcggttatctgcggatctacaagatatc |
10533169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 664
Target Start/End: Original strand, 26368527 - 26368562
Alignment:
| Q |
629 |
ttttcttcccttctattcttcattttcttctttccc |
664 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26368527 |
ttttcatcccttctattcttcattttcttctttccc |
26368562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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