View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_24 (Length: 252)
Name: NF14332_high_24
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 35410948 - 35410715
Alignment:
| Q |
13 |
atgtgtgtcttttcataaaactcctacaatttacaagttaagtagatttaaaacttcatctgttattttagcaattgaagcgatacaatataacttattt |
112 |
Q |
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| T |
35410948 |
atgtgtgtcttttcacaaaactcctataatttacaagttaagtagatttaaaacttcatctgttattttagcaattgaagcgatacaatataacttattt |
35410849 |
T |
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| Q |
113 |
ctcataacaacaacatagatttgtaactatatccaaacaaattccacctttttcatatcctttttgtgtacgggcttgataacagtctggagtacaagcc |
212 |
Q |
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| T |
35410848 |
ctcataacaacaacatagattagtaactatatccaaacaaattccaccttttttatatcctttttgtgtacaggcttgataacagtctggagtacaagcc |
35410749 |
T |
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| Q |
213 |
tctttgcaacaataatatcttggagatcctatgc |
246 |
Q |
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| T |
35410748 |
tctttgcaacaataatatcttggagatcctatgc |
35410715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 35407258 - 35407153
Alignment:
| Q |
22 |
ttttcataaaactcctacaatttacaagttaagtagatttaaaacttcatctgttattttagcaattgaagcgatacaatataacttatttctcataaca |
121 |
Q |
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|||||| |||||||| ||||||| |||| ||||||||||||| ||||| || |||||||||||||||||| |||| ||||||| | | || ||| |||| |
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| T |
35407258 |
ttttcacaaaactccaacaatttgcaagcaaagtagatttaaa-cttcaacttttattttagcaattgaagtgatataatataattcagttttcaaaaca |
35407160 |
T |
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| Q |
122 |
acaacat |
128 |
Q |
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||||||| |
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| T |
35407159 |
acaacat |
35407153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 35411617 - 35411562
Alignment:
| Q |
22 |
ttttcataaaactcctacaatttacaagttaagtagatttaaaacttcatctgttat |
78 |
Q |
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|||||| |||||||||||||||| ||||| |||||||||| ||||||||||| |||| |
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| T |
35411617 |
ttttcacaaaactcctacaatttgcaagtaaagtagattt-aaacttcatcttttat |
35411562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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