View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_27 (Length: 236)
Name: NF14332_high_27
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 3077802 - 3077727
Alignment:
| Q |
143 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctttgtgcattgctcggtagcgagagg |
218 |
Q |
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| T |
3077802 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctctgtgcattgcttggtagcgagagg |
3077727 |
T |
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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 3077902 - 3077829
Alignment:
| Q |
7 |
ggaggagaaggtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt |
80 |
Q |
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| T |
3077902 |
ggagaagagggtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttt |
3077829 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 44692722 - 44692825
Alignment:
| Q |
26 |
caactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttagtaggaggaatg |
125 |
Q |
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| T |
44692722 |
caactttggaaaagcccggctccgtcaaaagtggtggccctttcttggaaagttttgcttgatcgtattccgacgcggtggaatcttcgtagaaggaatg |
44692821 |
T |
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| Q |
126 |
ccct |
129 |
Q |
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|||| |
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| T |
44692822 |
ccct |
44692825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 15316226 - 15316260
Alignment:
| Q |
29 |
ctttggaaaagtccggctccgtctaaggtggtggc |
63 |
Q |
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| T |
15316226 |
ctttggaaaagtccggctccgtctaaggttgtggc |
15316260 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 34866471 - 34866382
Alignment:
| Q |
25 |
ccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttag |
114 |
Q |
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| T |
34866471 |
ccaactttggaaaagcccggccccctcaaaagtggtggccctttcttggaaagtcttgcttgatcgtattccgtcgcgattgaatcttag |
34866382 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 14248813 - 14248764
Alignment:
| Q |
25 |
ccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
74 |
Q |
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| T |
14248813 |
ccaaatttggaagagtccggctccgtctaaggcggtggctctttcttgga |
14248764 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 5008743 - 5008679
Alignment:
| Q |
20 |
tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgct |
84 |
Q |
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| T |
5008743 |
tttacgcaactttggaagaatccggctcctttgaaggtggtggcactctcttggaaggttttgct |
5008679 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 47337409 - 47337317
Alignment:
| Q |
20 |
tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatctt |
112 |
Q |
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| T |
47337409 |
tttagccaagtttggaagagcccggctccttctaaggtggtggcgctctcttggagatctttgcttaatcgtataccgacccgtttgaatctt |
47337317 |
T |
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