View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14332_high_4 (Length: 644)

Name: NF14332_high_4
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14332_high_4
NF14332_high_4
[»] chr4 (20 HSPs)
chr4 (1-259)||(39890611-39890869)
chr4 (426-626)||(39891087-39891287)
chr4 (290-427)||(39890915-39891055)
chr4 (24-98)||(23101267-23101341)
chr4 (20-110)||(2216080-2216169)
chr4 (20-110)||(16507073-16507162)
chr4 (20-110)||(2613948-2614037)
chr4 (21-110)||(2614736-2614825)
chr4 (21-110)||(678243-678331)
chr4 (39-81)||(51616051-51616093)
chr4 (11-88)||(42387819-42387896)
chr4 (56-110)||(2216868-2216922)
chr4 (208-259)||(2554194-2554245)
chr4 (56-110)||(16507861-16507915)
chr4 (21-110)||(50663314-50663402)
chr4 (57-110)||(52896693-52896746)
chr4 (206-259)||(3527861-3527914)
chr4 (206-259)||(38354252-38354305)
chr4 (204-256)||(29584781-29584833)
chr4 (21-120)||(55979598-55979697)
[»] chr3 (13 HSPs)
chr3 (26-121)||(21268072-21268167)
chr3 (36-99)||(54301941-54302002)
chr3 (20-110)||(1136532-1136621)
chr3 (20-110)||(52117192-52117281)
chr3 (20-110)||(52947499-52947588)
chr3 (21-110)||(52117980-52118068)
chr3 (21-99)||(34651126-34651204)
chr3 (20-110)||(49724887-49724976)
chr3 (56-110)||(1137322-1137376)
chr3 (56-110)||(49725678-49725732)
chr3 (83-120)||(32612081-32612118)
chr3 (21-99)||(40954948-40955027)
chr3 (215-259)||(54362021-54362065)
[»] chr8 (16 HSPs)
chr8 (17-110)||(36336630-36336723)
chr8 (20-110)||(11681279-11681368)
chr8 (20-110)||(32672605-32672694)
chr8 (20-110)||(35124361-35124450)
chr8 (21-110)||(11680492-11680580)
chr8 (21-110)||(27242700-27242788)
chr8 (21-110)||(27254275-27254363)
chr8 (23-110)||(27241915-27242002)
chr8 (23-110)||(27247788-27247875)
chr8 (21-110)||(14865288-14865377)
chr8 (57-120)||(14865834-14865897)
chr8 (216-259)||(32062255-32062298)
chr8 (56-110)||(32673393-32673447)
chr8 (56-110)||(35123607-35123661)
chr8 (39-96)||(12127077-12127134)
chr8 (72-120)||(12127045-12127093)
[»] chr7 (6 HSPs)
chr7 (11-120)||(34596700-34596807)
chr7 (25-110)||(35393484-35393568)
chr7 (21-110)||(35394419-35394506)
chr7 (57-110)||(29720809-29720862)
chr7 (21-87)||(31285787-31285851)
chr7 (57-110)||(31286574-31286627)
[»] chr1 (15 HSPs)
chr1 (21-110)||(41706740-41706828)
chr1 (20-110)||(11343091-11343180)
chr1 (20-110)||(11501110-11501199)
chr1 (21-110)||(4563078-4563166)
chr1 (20-110)||(4563865-4563954)
chr1 (56-118)||(11342337-11342399)
chr1 (57-120)||(26990844-26990907)
chr1 (21-110)||(16421687-16421775)
chr1 (21-110)||(11500320-11500409)
chr1 (21-110)||(38482199-38482288)
chr1 (57-110)||(14283154-14283207)
chr1 (21-87)||(14283928-14283992)
chr1 (57-110)||(41729117-41729170)
chr1 (57-110)||(41729588-41729641)
chr1 (226-255)||(47206733-47206762)
[»] chr5 (11 HSPs)
chr5 (39-120)||(25465220-25465301)
chr5 (21-110)||(17641427-17641515)
chr5 (21-110)||(34089678-34089766)
chr5 (21-110)||(34386193-34386281)
chr5 (215-252)||(36187647-36187684)
chr5 (67-121)||(10325766-10325820)
chr5 (21-110)||(26626306-26626394)
chr5 (21-110)||(38559890-38559977)
chr5 (21-110)||(19897738-19897827)
chr5 (23-87)||(20995007-20995070)
chr5 (56-120)||(38560852-38560916)
[»] chr6 (6 HSPs)
chr6 (20-110)||(10918172-10918261)
chr6 (21-87)||(1378766-1378831)
chr6 (21-87)||(1386514-1386579)
chr6 (21-87)||(1387324-1387389)
chr6 (191-259)||(7509765-7509833)
chr6 (56-110)||(10918961-10919015)
[»] chr2 (8 HSPs)
chr2 (24-120)||(36765040-36765137)
chr2 (57-120)||(36765860-36765922)
chr2 (215-259)||(929016-929060)
chr2 (57-120)||(39619048-39619111)
chr2 (57-120)||(45227496-45227558)
chr2 (24-120)||(45228517-45228612)
chr2 (290-342)||(22651093-22651145)
chr2 (215-259)||(34504167-34504211)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 39890611 - 39890869
Alignment:
Q  1 atcgctaaagtttatcacttacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcccg 100  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39890611 atcgttaaagtttatcacttacatacaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaacttatgcgcaaatatcccg 39890710  T
Q  101 ctcaaatttaaaatttatgtgttaattgtcatctaaattgtatttgtgagactccttgcattccatttaaattgtcgtttttgtaaagaaatatattact 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  39890711 ctcaaatttaaaatttatgtgttaattatcatctaaattgtatttgtgagacttcttacattccatttaaattgtcttttttgtaaagaaatatattact 39890810  T
Q  201 tttaagagaaatcctaacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39890811 tttaagggaaatcctagcatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 39890869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 426 - 626
Target Start/End: Original strand, 39891087 - 39891287
Alignment:
Q  426 tttttaagggaaaataatagccttttaattatttccccttgacccattttccatttatggccgtaaaacatttgcaattccaattcaacttgtcgcgcga 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39891087 tttttaagggaaaataatagccttttaattatttccccttgacccattttccatttatggccgtaaaacatttgcaattccaattcaacttgtcgcgcga 39891186  T
Q  526 tagattggtctttctctttcgaacatctcaatctcattctttatttccttataataataaattccccaaatcttttctctctttcttcctccaccgctcc 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39891187 tagattggtctttctctttcgaacatctcaatctcattctttatttccttataataataaattccccaaatcttttctctctttcttcctccaccgctcc 39891286  T
Q  626 t 626  Q
    |    
T  39891287 t 39891287  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 39890915 - 39891055
Alignment:
Q  290 attaattgaatgcataaaatttaatagaacaattgtacttttatgtttcttaacatg-gcccttaagacataagttaccattacactactttaaaaca-- 386  Q
    |||||||||||| | ||||||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||      
T  39890915 attaattgaatgtacaaaatttaatagaacaattatacttttaagttttttaacatgtgcccttaagacataagttagcattacactactttaaaacatt 39891014  T
Q  387 nnnnnnnataactaataattttcaaaatcctttacaacatt 427  Q
           |||||||||||||||||||||||||||| |||||    
T  39891015 tttttttataactaataattttcaaaatcctttactacatt 39891055  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 23101267 - 23101341
Alignment:
Q  24 tgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcc 98  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||| || ||||  ||||||||||    
T  23101267 tgcaaatacccccttaaatttaaaatttatgtagcaaatacccccctaaaatttataacttatatgcaaatatcc 23101341  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 2216080 - 2216169
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  2216080 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 2216169  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 16507073 - 16507162
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  16507073 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 16507162  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 2613948 - 2614037
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||| ||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  2613948 tacatgcaaatcccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 2614037  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 2614825 - 2614736
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||| | || ||||| | ||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  2614825 acatgcaaataccctcctgaaattaaacatttatg-agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 2614736  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 678331 - 678243
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||  | ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  678331 acatgcaaataccccttgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 678243  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 51616093 - 51616051
Alignment:
Q  39 aaatttaaaacttatgtagcaaataccaccctcaaatttaaaa 81  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  51616093 aaatttaaaacttatgtagcaaatacccccctcaaattaaaaa 51616051  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 42387819 - 42387896
Alignment:
Q  11 tttatcacttacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgc 88  Q
    |||| ||||||| ||||||| ||| || |||||||||||||||||||||||||   | ||||| ||||||| ||||||    
T  42387819 tttaacacttacgtgcaaattccccctcaaatttaaaacttatgtagcaaatatgcctctcaactttaaaacttatgc 42387896  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 2216922 - 2216868
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  2216922 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 2216868  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 2554245 - 2554194
Alignment:
Q  208 gaaatcctaacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    ||||| ||||| |||| ||||||| ||||||||||||| |||||||||||||    
T  2554245 gaaatgctaacttgtgcccttaaggcacaagttaatgaatcaaaaatagaaa 2554194  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 16507915 - 16507861
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  16507915 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 16507861  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 50663314 - 50663402
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||  | ||||| || | |||||| |||||||| |||||||||||||||| |||||  ||||||||||| ||||||||||    
T  50663314 acatgcaaataccccttgaaattaaacatttatgt-gcaaatacgaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 50663402  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 52896693 - 52896746
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  52896693 gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 52896746  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 3527861 - 3527914
Alignment:
Q  206 gagaaatcctaacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||||||  ||||||||||||||||||||||||| ||| |||| ||| ||||||    
T  3527861 gagaaatgttaacatgtgtccttaagacacaagtcaataagtccaaagtagaaa 3527914  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 38354252 - 38354305
Alignment:
Q  206 gagaaatcctaacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||||||  |||| ||||||||||||| |||||||||||| ||||| |||||||    
T  38354252 gagaaatgttaacttgtgtccttaagatacaagttaatgaatcaaatatagaaa 38354305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 29584833 - 29584781
Alignment:
Q  204 aagagaaatcctaacatgtgtccttaagacacaagttaatgagtcaaaaatag 256  Q
    ||||||||  ||||| |||| ||||||||||||||||||||| ||||| ||||    
T  29584833 aagagaaaagctaacttgtgcccttaagacacaagttaatgaatcaaatatag 29584781  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 55979697 - 55979598
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatg 119  Q
    |||||||||||||| | | || ||||| | |||||| ||||||||| |||| ||||| || | ||||| ||||||| | | |||||||||||||||||||    
T  55979697 acatgcaaatacccccctgaaattaaacatttatgt-gcaaatacccccctgaaattaaacatttatgtgcaaataccaccctcaaatttaaaatttatg 55979599  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 21268072 - 21268167
Alignment:
Q  26 caaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgtg 121  Q
    ||||||||| || ||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||| | | ||||||||||| |||||||    
T  21268072 caaataccccctcaaatttaaaacttatgtagcaaatacccctctcaaatttaaaatttatgtgcaaatatctcccccaaatttaaaacttatgtg 21268167  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 54301941 - 54302002
Alignment:
Q  36 cttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatccc 99  Q
    ||||||||||||||||||||||||||||  || ||||||||||||| ||||| |||||||||||    
T  54301941 cttaaatttaaaacttatgtagcaaata--acgctcaaatttaaaacttatgtgcaaatatccc 54302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 1136532 - 1136621
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  1136532 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 1136621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 52117192 - 52117281
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  52117192 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 52117281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 52947588 - 52947499
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  52947588 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 52947499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 52118068 - 52117980
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | ||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  52118068 acatgcaaataccccctgaaattaaacatttatg-agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 52117980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 34651204 - 34651126
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatccc 99  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  |||||||||||    
T  34651204 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc 34651126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 49724887 - 49724976
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| |||||||| |||||||||||||||| |||||  ||||||||||| ||||||||||    
T  49724887 tacatgcaaataccccctgaaattaaacatttatgt-gcaaatactaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 49724976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 1137376 - 1137322
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  1137376 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 1137322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 49725732 - 49725678
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  49725732 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 49725678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 32612118 - 32612081
Alignment:
Q  83 ttatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  32612118 ttatgtgcaaatatccccctcaaatttaaaatttatgt 32612081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 40954948 - 40955027
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatccc 99  Q
    |||||||||||||| | | || ||||| | |||||| ||||||||||||||||||||||||| |||||  |||||||||||    
T  40954948 acatgcaaatacccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc 40955027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 54362021 - 54362065
Alignment:
Q  215 taacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||    
T  54362021 taacttgtgcccttaaggcacaagttaatgagtcaaaagtagaaa 54362065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 36336630 - 36336723
Alignment:
Q  17 acttacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaattta 110  Q
    ||||| ||| |||||||  || |||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||  |||||||||    
T  36336630 acttatatgtaaatacctcctcaaatttaaaacttatgtagcaaataccaccctcaaattcaaaatttatgtgcaaatatccccttcaaattta 36336723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 11681368 - 11681279
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  11681368 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 11681279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 32672605 - 32672694
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  32672605 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 32672694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 35124450 - 35124361
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  35124450 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 35124361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 11680492 - 11680580
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  11680492 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 11680580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 27242788 - 27242700
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  27242788 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 27242700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 27254363 - 27254275
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  27254363 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 27254275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 27241915 - 27242002
Alignment:
Q  23 atgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||| ||| || ||||| | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  27241915 atgcaaatacccccttgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 27242002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 27247788 - 27247875
Alignment:
Q  23 atgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||| ||| || ||||| | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  27247788 atgcaaatacccccttgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 27247875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 14865288 - 14865377
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| | | || ||||| | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  14865288 acatgcaaatacccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 14865377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 14865897 - 14865834
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||| |||| ||||| || | ||||| ||||||||| | ||||||||||||||||||||    
T  14865897 gcaaatacccccctgaaattaaacatttatgtgcaaatatcaccctcaaatttaaaatttatgt 14865834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 32062255 - 32062298
Alignment:
Q  216 aacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||    
T  32062255 aacatgtgtccttaagtcacaagttaatgaatcaaatatagaaa 32062298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 32673447 - 32673393
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  32673447 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 32673393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 35123607 - 35123661
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  35123607 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 35123661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 12127077 - 12127134
Alignment:
Q  39 aaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatat 96  Q
    |||||||||| |||||||||||||||| |||| ||||||| || ||||  ||||||||    
T  12127077 aaatttaaaatttatgtagcaaatacccccctaaaatttataacttatatgcaaatat 12127134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 12127045 - 12127093
Alignment:
Q  72 aaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    |||||||| | ||||| ||||||| ||| ||||||||||||||||||||    
T  12127045 aaatttaacatttatgtgcaaatacccccctcaaatttaaaatttatgt 12127093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 34596700 - 34596807
Alignment:
Q  11 tttatcacttacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaattta 110  Q
    |||| ||||||| ||||||||||| || |||||||||| |||||||||||||||||  ||||||||||||| ||||||  ||||| ||  || |||||||    
T  34596700 tttaacacttacgtgcaaataccccctcaaatttaaaatttatgtagcaaatacca--ctcaaatttaaaacttatgcataaatacccttctaaaattta 34596797  T
Q  111 aaatttatgt 120  Q
    ||| ||||||    
T  34596798 aaacttatgt 34596807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 35393484 - 35393568
Alignment:
Q  25 gcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  35393484 gcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 35393568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 35394506 - 35394419
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  35394506 acatgcaaataccccctgaaattaaaca-ttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 35394419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 29720862 - 29720809
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  29720862 gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 29720809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 31285787 - 31285851
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg 87  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||    
T  31285787 acatgcaaataccc-ctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatg 31285851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 31286627 - 31286574
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  31286627 gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 31286574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 41706828 - 41706740
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgc-gcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  41706828 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgcagcaaatatccc-ctcaaattta 41706740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 11343180 - 11343091
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  11343180 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 11343091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 11501199 - 11501110
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  11501199 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 11501110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 4563078 - 4563166
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  4563078 acatgcaaataccccctaaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 4563166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 4563954 - 4563865
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||| ||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  4563954 tacatgcaaatcccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 4563865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 11342337 - 11342399
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaatttaaaatttat 118  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| |||||||||| |||||||    
T  11342337 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaatttataatttat 11342399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 26990907 - 26990844
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||| ||||||||||||| | ||||| ||||||| ||| ||||||||||||| ||||||    
T  26990907 gcaaatacccccctcaaatttaacacttatgtgcaaatacccccctcaaatttaaaacttatgt 26990844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 16421775 - 16421687
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||  | ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  16421775 acatgcaaataccccatgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 16421687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 11500320 - 11500409
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| | | || ||||| | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  11500320 acatgcaaatacccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 11500409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 38482288 - 38482199
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| | | || ||||| | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  38482288 acatgcaaatacccccatgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 38482199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 14283154 - 14283207
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  14283154 gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 14283207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 14283992 - 14283928
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg 87  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||    
T  14283992 acatgcaaataccc-ctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatg 14283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 41729117 - 41729170
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  41729117 gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 41729170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 41729641 - 41729588
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  41729641 gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 41729588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 47206733 - 47206762
Alignment:
Q  226 cttaagacacaagttaatgagtcaaaaata 255  Q
    ||||||||||||||||||||||||||||||    
T  47206733 cttaagacacaagttaatgagtcaaaaata 47206762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 25465301 - 25465220
Alignment:
Q  39 aaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    |||||||||| ||||||||||||||   ||||||||||||||| ||||| || |||| ||| |||||||||||||| |||||    
T  25465301 aaatttaaaatttatgtagcaaatatttccctcaaatttaaaacttatgtgcgaatacccccctcaaatttaaaatgtatgt 25465220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 17641515 - 17641427
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  17641515 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 17641427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 34089766 - 34089678
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  34089766 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 34089678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 34386281 - 34386193
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  34386281 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 34386193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 36187647 - 36187684
Alignment:
Q  215 taacatgtgtccttaagacacaagttaatgagtcaaaa 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36187647 taacatgtgtccttaagacacaagttaatgagtcaaaa 36187684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 10325766 - 10325820
Alignment:
Q  67 ccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgtg 121  Q
    ||||||||||||||| ||||| ||||||||||| || |||||||||| |||||||    
T  10325766 ccctcaaatttaaaacttatgtgcaaatatcccccttaaatttaaaacttatgtg 10325820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 26626394 - 26626306
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattat-gcgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| ||||   ||||||||||| ||||||||||    
T  26626394 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatatagcaaatatccc-ctcaaattta 26626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 38559890 - 38559977
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| ||| || |||||  |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  38559890 acatgcaaataccc-cttgaaattaaacattatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 38559977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 19897738 - 19897827
Alignment:
Q  21 acatgcaaataccctcttaaatttaaa-acttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||| | | || ||||| | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  19897738 acatgcaaatacccccatgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 19897827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 20995007 - 20995070
Alignment:
Q  23 atgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg 87  Q
    |||||||||||| || |||||||| ||||| || |||||||||  |||||||||||||| |||||    
T  20995007 atgcaaataccccctcaaatttaatacttaggttgcaaatacc-tcctcaaatttaaaacttatg 20995070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 38560916 - 38560852
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    |||||||||| |||| ||||| || | ||||| ||||||| | | ||||||||||||||||||||    
T  38560916 agcaaatacccccctgaaattaaacatttatgtgcaaataccaccctcaaatttaaaatttatgt 38560852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 10918172 - 10918261
Alignment:
Q  20 tacatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    ||||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  10918172 tacatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 10918261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 1378766 - 1378831
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg 87  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||    
T  1378766 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatg 1378831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 1386514 - 1386579
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg 87  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||    
T  1386514 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatg 1386579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 1387389 - 1387324
Alignment:
Q  21 acatgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaatttaaaaattatg 87  Q
    |||||||||||||| || ||||| || | |||||| ||||||||||||||||||||||||| |||||    
T  1387389 acatgcaaataccccctgaaattaaacatttatgt-gcaaataccaccctcaaatttaaaatttatg 1387324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 7509833 - 7509765
Alignment:
Q  191 atatattacttttaagagaaatcctaacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||||||  ||||||| ||||| ||||| | || ||||||| |||||||||||||||||||| ||||||    
T  7509833 atatattttttttaagggaaatgctaacttttgcccttaaggcacaagttaatgagtcaaaagtagaaa 7509765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 10919015 - 10918961
Alignment:
Q  56 agcaaataccaccctcaaatttaaaaattatg-cgcaaatatcccgctcaaattta 110  Q
    |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||    
T  10919015 agcaaataccaccctcaaatttaaaatttatgtagcaaatatccc-ctcaaattta 10918961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 36765040 - 36765137
Alignment:
Q  24 tgcaaataccctctt-aaatttaaaacttatgtagcaaataccaccctcaaa-tttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||||| ||| |||||||| | |||||| ||||||||| |||||||| ||||||||||||| ||||||  ||| ||||||||||||||| ||||    
T  36765040 tgcaaatacccccttgaaatttaacatttatgt-gcaaatacccccctcaaaatttaaaaattatgtgcaaattcccctctcaaatttaaaattaatgt 36765137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 36765922 - 36765860
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||| |||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||    
T  36765922 gcaaatacc-ccctaaaatttaacatttatgtgcaaatatccccctcaaatttaaaatttatgt 36765860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 929016 - 929060
Alignment:
Q  215 taacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||    
T  929016 taacttgtgtccttaagacacaagttaaagagtcaaaagtagaaa 929060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 39619111 - 39619048
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||| |||| |||||||| | ||||| ||||||| | | ||||||||||||||||||||    
T  39619111 gcaaatacccccctaaaatttaacatttatgtgcaaatacctccctcaaatttaaaatttatgt 39619048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 45227496 - 45227558
Alignment:
Q  57 gcaaataccaccctcaaatttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||| |||| |||||||| | ||||| ||||||||||| ||||||||||||||| ||||    
T  45227496 gcaaatacccccctaaaatttaacatttatgtgcaaatatccc-ctcaaatttaaaattaatgt 45227558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 45228612 - 45228517
Alignment:
Q  24 tgcaaataccctcttaaatttaaaacttatgtagcaaataccaccctcaaa-tttaaaaattatgcgcaaatatcccgctcaaatttaaaatttatgt 120  Q
    ||||||||||| || |||||||| | |||||| ||||||||  |||||||| ||||||| ||| | ||||||| ||| || |||||||||||||||||    
T  45228612 tgcaaataccccctaaaatttaacatttatgt-gcaaatactcccctcaaaatttaaaatttaagtgcaaatacccc-cttaaatttaaaatttatgt 45228517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 22651145 - 22651093
Alignment:
Q  290 attaattgaatgcataaaatttaatagaacaattgtacttttatgtttcttaa 342  Q
    |||||||||||||||||||||||| |||| | || || ||||||||| |||||    
T  22651145 attaattgaatgcataaaatttaagagaatatttctatttttatgttgcttaa 22651093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 34504167 - 34504211
Alignment:
Q  215 taacatgtgtccttaagacacaagttaatgagtcaaaaatagaaa 259  Q
    |||| |||| ||||||||||||||||||||| |||||| ||||||    
T  34504167 taacttgtgcccttaagacacaagttaatgaatcaaaagtagaaa 34504211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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