View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_high_5 (Length: 606)
Name: NF14332_high_5
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Original strand, 6083105 - 6083682
Alignment:
| Q |
18 |
taatttacgaagaaagagttgcgcatttggatcgtactctcaatgaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatga |
117 |
Q |
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| T |
6083105 |
taatttacgaagaaagagttgcgcatttggatcgtactctcaaggaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatga |
6083204 |
T |
|
| Q |
118 |
tgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaa |
217 |
Q |
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| T |
6083205 |
tgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaa |
6083304 |
T |
|
| Q |
218 |
aattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatga |
317 |
Q |
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| T |
6083305 |
aattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatga |
6083404 |
T |
|
| Q |
318 |
ttggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaag |
417 |
Q |
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| T |
6083405 |
ttggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaag |
6083504 |
T |
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| Q |
418 |
agtaatgctttcgcaaacagcgtcaaaactgttgcaacttgaatctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgca |
517 |
Q |
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| T |
6083505 |
agtaatgctttcgcaaacagcgtcaaaactgttgcaacttgagtctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgca |
6083604 |
T |
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| Q |
518 |
ttgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtcctttgcttct |
595 |
Q |
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| T |
6083605 |
ttgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgcggggagtccttggcttct |
6083682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 404
Target Start/End: Complemental strand, 39108298 - 39107915
Alignment:
| Q |
21 |
tttacgaagaaagagttgcgcatttggatcgtactctcaatgaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatgatgc |
120 |
Q |
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|||| ||||||||||| || ||||||||| | |||| || |||||||||| |||||| | |||||| |||| ||||||| |||||||||| ||||||| |
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| T |
39108298 |
tttatgaagaaagagtagcccatttggatggagctctgaaggaatgtatgcagcagttacgatttgttcgagaagaacaagggcaaaggattcatgatgc |
39108199 |
T |
|
| Q |
121 |
tgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaat |
220 |
Q |
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| T |
39108198 |
tgtgatgaaggcttcaaaggaatttgaaaaggagtgcatggtttgggaggatcagttatccgtgacaagtaaaaggctggcaaaagttgagactgaaaat |
39108099 |
T |
|
| Q |
221 |
tcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattg |
320 |
Q |
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| T |
39108098 |
tctcatcttaatacatccatttttcaaagagaaaaattgattgaggatctgaaaagacaattgactcaagctgaggcagatcatagtgcactgatggtta |
39107999 |
T |
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| Q |
321 |
gattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaag |
404 |
Q |
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| T |
39107998 |
gattagagtccactgagaaagataatgcttctctgacatatgaggtccgagtacttgaaaaggagctggagatccgaaatgaag |
39107915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 578
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
530 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
578 |
Q |
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||||||||||||| |||| | ||||||||||||||||| |||||||||| |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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