View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14332_high_7 (Length: 581)
Name: NF14332_high_7
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_high_7 |
 | |
|
| [»] scaffold0722 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0722 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 561
Target Start/End: Original strand, 5830 - 6366
Alignment:
| Q |
10 |
catcatcatgtactacattttatggtgaataaaagtgatggggtcccggttctttaatttggtgttcagatggcttgagagatgaaaaaga-gcatatga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
5830 |
catcatcatgtactacattttatggtgaataaaagtgatggggtcccggttctttaatttggtgttcagatggctagagagatgaaaaagaagcatatga |
5929 |
T |
|
| Q |
109 |
tgtaatgctaatttaaagttgttcagatcagcatgcaataaattcctcaatctcaaaccacagtttcacaacacctcgtgcttctac----caactcttc |
204 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5930 |
tgtaatgctaagttaaagttgttcagatcagcatgcaataaattcctcaatctcaaaccacagtttcacaacacctcgtgcttctacttttcaactcttc |
6029 |
T |
|
| Q |
205 |
cagaaactgcttcaaacaccatcacaagatttgggcattgtagtaaacatcaatctcaacaagccacttgctaatgtgtctatttccctattgattgtct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6030 |
cagaaactgcttcaaacaccatcacaagatttgggcattgtagtaaacatcaatctcaacaagccacttgcttatgtgtctatttccctattgattgtct |
6129 |
T |
|
| Q |
305 |
ccgccgtgtataatcatatttgatgcgtgtcggacactaaatatagatacttctttttattggaattcaaattttagttcgtcacattataaaaatctaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6130 |
ccgccgtgtataatcatatttgatgcgtatcggacattaaatatacgtacttctttttatcggaattcaaattttagttcgtcacattataaaaatctaa |
6229 |
T |
|
| Q |
405 |
tcctttacactagacttaaagactcttgattttttgatttacactttactatctatataaattaataaatgctactag-attttaatacaaaatttacta |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||| | |
|
|
| T |
6230 |
tcctttacactagacttaaagactcttgat-------------------tatctatataaattaat-aatgctactagtattttaatataaaatttac-a |
6308 |
T |
|
| Q |
504 |
cacattatgcatattaatccattctttaaacatgtgtaacatatttagatggataaaa |
561 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6309 |
cacgttatgcatattaatcaattctttaaacatgtgtaacatatttagatggataaaa |
6366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University