View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_low_1 (Length: 778)
Name: NF14332_low_1
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_1 |
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| [»] scaffold1528 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 7 - 763
Target Start/End: Original strand, 2467914 - 2468669
Alignment:
| Q |
7 |
gattatacttattatacttataaagtaaagtgcaaaatgtaaagagatacgggaagaagaaagacacatgaaattatcttagtttactccacaatttata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||| |
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| T |
2467914 |
gattatacttattatacttataaagtaaagtgcaaaatgtaaagagatacgggaagaagaaagacacatacaattatcctagttcactccacaatctata |
2468013 |
T |
|
| Q |
107 |
actacttcagtcctttcacacttgaaggatttttcactataatatacctgattaaatatttccctaggactcatagtcctataattcttttgcctcaaac |
206 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
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| T |
2468014 |
gctacttcagtcctttcacacttaaaggatttttcactataatatacctgattaaatatttccctaggactcatagacctagaattctttttcctcaaac |
2468113 |
T |
|
| Q |
207 |
tagaggaaaacttacaataaaaattgttcgagcacaatacaacattttgtatttttctatactttgatttttctagacaaggcttgtgttttcttcaaca |
306 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468114 |
tagaggaaaacttacaataaaaattgttcgaccacaccacaacattttgtatttttctatactttgatttttctagacaaggcttgtgttttcttcaaca |
2468213 |
T |
|
| Q |
307 |
taaaaaattccttcatttataagatttggaataagtctaatgcagagagaatccttgtcttgaatgtttgaccattgcttgcaatctttgccttaattat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468214 |
taaaaaattccttcatttataagatttggaataagtctaatgcagagagaatccttgtcttgaatgtttgaccattgcttgcaatctttgccttaattat |
2468313 |
T |
|
| Q |
407 |
aatttattattcttgaatttaccttcgtatttgattcacttcaatatctatagaattttgagcaagtcattgttctccataccggaagagatttgtttca |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468314 |
aatttattattcttgaatttaccttcgtatttgattcacttcaatatctatagaattttgagcaagtcattgttctccataccggaagagatttgtttca |
2468413 |
T |
|
| Q |
507 |
cttgaagtagaaaagggatgcttttgtatagacaattagctgatccaaattttcgaccacatagcattggcttggattgagaacatagatgctgacattg |
606 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
2468414 |
cttgaagaagaaaagggatgcttttgtatagacaattagctgatccaaaatttcaaccacatagcattggcttggattgagcacatagatgttgacatta |
2468513 |
T |
|
| Q |
607 |
atnnnnnnnttccttcttaatgcataactactactttcaaaactttcttggtccacaaggtaatgcacaaaaggacnnnnnnnggtagttttctaatgga |
706 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
2468514 |
ataaaaaaa-tccttcttaatgcataagtactactttcaaaactttcttggtccacaaggtaacgcacaaaaggacaaaaaaaggtagttttctaatgga |
2468612 |
T |
|
| Q |
707 |
tagttctttgtttgctcaccaagtgtgaagctctatatatggccacatcattcaaat |
763 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2468613 |
taattctttgtttgctcaccaagtgtgaagctctatatatggctacatcattcaaat |
2468669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1528 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1528
Description:
Target: scaffold1528; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 443 - 356
Alignment:
| Q |
121 |
ttcacacttgaaggatttttcactataatatacctgattaaatatttccctaggactcatagtcctataattcttttgcctcaaacta |
208 |
Q |
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|||||||| |||||| ||||||||||||| |||||||||| ||||| ||| ||| | ||||| || | ||||||||||||||||| |
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| T |
443 |
ttcacactcgaaggacttttcactataatttacctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaacta |
356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 17753719 - 17753632
Alignment:
| Q |
121 |
ttcacacttgaaggatttttcactataatatacctgattaaatatttccctaggactcatagtcctataattcttttgcctcaaacta |
208 |
Q |
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|||||||| |||||| ||||||||||||| |||||||||| ||||| ||| ||| | ||||| || | ||||||||||||||||| |
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| T |
17753719 |
ttcacactcgaaggacttttcactataatttacctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaacta |
17753632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Complemental strand, 169095 - 169054
Alignment:
| Q |
722 |
tcaccaagtgtgaagctctatatatggccacatcattcaaat |
763 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||| |
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| T |
169095 |
tcaccaagattgaagctctatatatggcaacatcattcaaat |
169054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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