View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14332_low_10 (Length: 425)
Name: NF14332_low_10
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 36348163 - 36348560
Alignment:
| Q |
15 |
atgaaatatggatttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacatcagagcctacaaaaacaaagttagtta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36348163 |
atgaaatatggatttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacgtcagagcctacaaaaacaaagttagtta |
36348262 |
T |
|
| Q |
115 |
attaacacgtatttcaatccaattaatatctttgattatgaaagttgtaagcc-gtattctaaacaattcaattggaacagtcaaatcatagttattaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36348263 |
attaacacgtatttcaatccaattaatatctttgattatgaaagttgtaagcccgtattctaaacaattcaattggaacagtcaaatcatagttattaaa |
36348362 |
T |
|
| Q |
214 |
tcaatgttcaatttaaattcaacgactgagatttgactaaatggactaaattgtcgagaaaatgtaggtagaactatgtatacataccgttggagcatcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36348363 |
tcaatgttcaatttaaattcaacgactgagatttgactaaatggactaaattgtcgagaaaatgtaggtagaactatgtatacataccgttggagcatcc |
36348462 |
T |
|
| Q |
314 |
ttgcaaggctgaaggnnnnnnnnngtgaagaggcataagattggtc---ataattaatttgaatatgattaattatatagattcattgatgcataatt |
408 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36348463 |
ttgcaaggctgaagaaaaaaaaaagtgaagaggcataagattggtcataataattaatttgaatatgattaattatatagattcattgatgcataatt |
36348560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 36359454 - 36359736
Alignment:
| Q |
26 |
atttgttgcgcatttcgtatcttcaaattctcaactatcaagtcctcgcaattagcaaacatcagagcctacaaaaacaaagttagttaattaacacgta |
125 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||| ||||||| |||| || |||| | |||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
36359454 |
atttgttgcgcattttgtattgtcaaatcctcaactattaagtccttgcaactatcaaatgttagagcctacaaaaataaatttagttaattaacaagta |
36359553 |
T |
|
| Q |
126 |
tttcaatccaattaatatctttgattatgaaagttgtaagccgtattctaaacaattcaattggaacagtcaaatcatagttattaaatcaatgttcaat |
225 |
Q |
| |
|
| |||||||||| ||| |||||||||| || |||| ||||||| ||| ||| |||||| ||||||| ||||| ||||||||||| |
|
|
| T |
36359554 |
t----atccaattaaaatccttgattatga-------aatccgt------aacaatttaatctgaatagtcaactcatagtcgttaaaccaatgttcaat |
36359636 |
T |
|
| Q |
226 |
ttaaattcaacgactgagatttgactaaatggactaaattgtcga-gaaaatgtaggtagaactatgtatacataccgttggagcatccttgcaaggctg |
324 |
Q |
| |
|
||||||| ||||| ||||||||||||||| | |||||||| || | |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36359637 |
ttaaatttaacgattgagatttgactaaacatattaaattgttgatttttttttaggtagagctatgtatacataccgttggagcatccttgcaaggctg |
36359736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 36359764 - 36359817
Alignment:
| Q |
354 |
ttggtcataattaatttgaatatgattaattatatagattcattgatgcataatt |
408 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
36359764 |
ttggtcataattaatttgaatatgatt-attatatagattcattgattcataatt |
36359817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University