View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14332_low_13 (Length: 391)

Name: NF14332_low_13
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14332_low_13
NF14332_low_13
[»] chr8 (3 HSPs)
chr8 (16-377)||(5088179-5088550)
chr8 (54-103)||(10727451-10727500)
chr8 (46-96)||(12361293-12361343)
[»] chr6 (5 HSPs)
chr6 (45-107)||(29249491-29249553)
chr6 (54-105)||(10452333-10452384)
chr6 (45-98)||(30536884-30536937)
chr6 (67-100)||(31776189-31776222)
chr6 (58-98)||(34882340-34882380)
[»] chr7 (6 HSPs)
chr7 (68-106)||(33266397-33266435)
chr7 (52-104)||(7087056-7087108)
chr7 (45-96)||(389936-389987)
chr7 (52-98)||(3019888-3019934)
chr7 (58-106)||(37064379-37064427)
chr7 (70-106)||(40371565-40371601)
[»] chr1 (3 HSPs)
chr1 (67-104)||(26866433-26866470)
chr1 (45-98)||(21002253-21002306)
chr1 (42-98)||(33723301-33723357)
[»] chr5 (7 HSPs)
chr5 (67-106)||(14331486-14331525)
chr5 (67-106)||(14932416-14932455)
chr5 (69-106)||(9174938-9174975)
chr5 (58-98)||(1773025-1773065)
chr5 (42-98)||(26004916-26004972)
chr5 (34-98)||(32194011-32194074)
chr5 (66-106)||(42646789-42646829)
[»] chr4 (2 HSPs)
chr4 (67-106)||(27043741-27043780)
chr4 (52-92)||(23676933-23676973)
[»] chr2 (5 HSPs)
chr2 (67-98)||(30331871-30331902)
chr2 (52-99)||(37419585-37419632)
chr2 (46-98)||(2790337-2790389)
chr2 (68-104)||(6772446-6772482)
chr2 (42-98)||(9996833-9996889)
[»] chr3 (6 HSPs)
chr3 (58-107)||(32582848-32582897)
chr3 (66-99)||(46407861-46407894)
chr3 (45-98)||(50211833-50211886)
chr3 (66-98)||(8007585-8007617)
chr3 (67-99)||(26990143-26990175)
chr3 (68-104)||(31615473-31615509)
[»] scaffold0024 (1 HSPs)
scaffold0024 (67-107)||(21208-21248)


Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 5088179 - 5088550
Alignment:
Q  16 aaaataaagccaaattgcttctctataagcagtcttacaagtacttatagaagtagat----------aagctgaaataagtcaatccaaacataccctt 105  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||          ||||||||||||||||||||||||||||||||    
T  5088179 aaaataaagccaaattgcttctctataagtagtcttacaagtatttatagaagtagataagctgagataagctgaaataagtcaatccaaacataccctt 5088278  T
Q  106 atgatgttccatggtgtttctatatgattgtatactcagttctatgtgtctaatttaagctttttgtccagtagctaaattgtgctgtgatttgtttagt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5088279 atgatgttccatggtgtttctatatgattgtatactcagttctatgtgtctaatttaagctttttgtccagtagctaaattgtgctgtgatttgtttagt 5088378  T
Q  206 tggctgcacctttggagacattaggaaaagctgcagctgaactacaaataaagaaacggactcatataggtaggtatatgcaaatccacaaaaggagcat 305  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5088379 tggctgcacctttggagacattaggaagagctgcagctgaactacaaataaagaaacggactcatataggtaggtatatgcaaatccacaaaaggagcat 5088478  T
Q  306 gtgttctaccgaatacagttttatgtttaagttcacgttgtaaaatgtagctagctagcatgtgatgtgatc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5088479 gtgttctaccgaatacagttttatgtttaagttcacgttgtaaaatgtagctagctagcatgtgatgtgatc 5088550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 10727451 - 10727500
Alignment:
Q  54 aagtacttatagaagtagataagctgaaataagtcaatccaaacataccc 103  Q
    ||||||||||| |||||||||| || ||||||||||||||||||| ||||    
T  10727451 aagtacttatacaagtagataaactcaaataagtcaatccaaacagaccc 10727500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 12361293 - 12361343
Alignment:
Q  46 agtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaa 96  Q
    ||||| |||||||||||||  |||||||||| | |||||||||||||||||    
T  12361293 agtctaacaagtacttatatcagtagataagttcaaataagtcaatccaaa 12361343  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 29249491 - 29249553
Alignment:
Q  45 cagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaacatacccttat 107  Q
    ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||    
T  29249491 cagtcttacaagtacttataacagtaaataagctcaaataagtcaatccaaacatgcccttat 29249553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 10452384 - 10452333
Alignment:
Q  54 aagtacttatagaagtagataagctgaaataagtcaatccaaacataccctt 105  Q
    ||||||||||| || |||||||||| ||||||| |||||||||||| |||||    
T  10452384 aagtacttatataaatagataagctcaaataagccaatccaaacatgccctt 10452333  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 30536937 - 30536884
Alignment:
Q  45 cagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    |||||| | ||||||||||  |||||||||| || |||||||||||||||||||    
T  30536937 cagtctaataagtacttatgtaagtagataaactcaaataagtcaatccaaaca 30536884  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 31776222 - 31776189
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacata 100  Q
    |||||||||||| |||||||||||||||||||||    
T  31776222 agtagataagctcaaataagtcaatccaaacata 31776189  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 34882380 - 34882340
Alignment:
Q  58 acttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  34882380 acttatactagtagataagatgaaataagtcaatccaaaca 34882340  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 33266435 - 33266397
Alignment:
Q  68 gtagataagctgaaataagtcaatccaaacataccctta 106  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  33266435 gtagataagctcaaataagtcaatccaaacataccctta 33266397  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 7087108 - 7087056
Alignment:
Q  52 acaagtacttatagaagtagataagctgaaataagtcaatccaaacataccct 104  Q
    |||||| ||||||  ||||||||| ||||||| ||||||||||||||||||||    
T  7087108 acaagtgcttatactagtagataaactgaaattagtcaatccaaacataccct 7087056  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 389936 - 389987
Alignment:
Q  45 cagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaa 96  Q
    |||||| |||||||||||| |||||||||| ||| ||||||| |||||||||    
T  389936 cagtctcacaagtacttatggaagtagataggctcaaataagccaatccaaa 389987  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 3019888 - 3019934
Alignment:
Q  52 acaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    |||||||||||||  |||||||||||| ||||||||||||| |||||    
T  3019888 acaagtacttatactagtagataagctcaaataagtcaatcaaaaca 3019934  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 37064427 - 37064379
Alignment:
Q  58 acttatagaagtagataagctgaaataagtcaatccaaacataccctta 106  Q
    |||||||  |||||||||| | ||||||||||||||||||| |||||||    
T  37064427 acttatatcagtagataagatcaaataagtcaatccaaacagaccctta 37064379  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 40371601 - 40371565
Alignment:
Q  70 agataagctgaaataagtcaatccaaacataccctta 106  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  40371601 agataagctcaaataagtcaatccaaacatgccctta 40371565  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 26866433 - 26866470
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacataccct 104  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26866433 agtagataagctgaaataagtcaatccaaacagaccct 26866470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 21002253 - 21002306
Alignment:
Q  45 cagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    |||||| |||||| |||||  ||||||||||||| ||||||| |||||||||||    
T  21002253 cagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaaca 21002306  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 33723357 - 33723301
Alignment:
Q  42 aagcagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    ||||||||| ||||||  |||| | |||||||||| | |||||||||||||||||||    
T  33723357 aagcagtctcacaagtgtttatggtagtagataagttcaaataagtcaatccaaaca 33723301  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 14331486 - 14331525
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacataccctta 106  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  14331486 agtagataagctcaaataagtcaatccaaacagaccctta 14331525  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 14932416 - 14932455
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacataccctta 106  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  14932416 agtagataagctcaaataagtcaatccaaacatactctta 14932455  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 9174938 - 9174975
Alignment:
Q  69 tagataagctgaaataagtcaatccaaacataccctta 106  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  9174938 tagataagctcaaataagtcaatccaaacatgccctta 9174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 1773065 - 1773025
Alignment:
Q  58 acttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    |||||| |||||||||||||| ||||||| |||||||||||    
T  1773065 acttatggaagtagataagctaaaataagccaatccaaaca 1773025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 26004972 - 26004916
Alignment:
Q  42 aagcagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    ||||||| | |||||| |||||   |||||||||||| |||||||||||||||||||    
T  26004972 aagcagtttgacaagtgcttatgctagtagataagctaaaataagtcaatccaaaca 26004916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 32194074 - 32194011
Alignment:
Q  34 ttctctataagcagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    |||||||||| |||||| |||||| ||||||  | ||| |||||| |||||||||||||||||||    
T  32194074 ttctctataa-cagtctcacaagttcttatatcattagttaagctcaaataagtcaatccaaaca 32194011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 42646789 - 42646829
Alignment:
Q  66 aagtagataagctgaaataagtcaatccaaacataccctta 106  Q
    ||||||||||||| || |||||||||||||||| |||||||    
T  42646789 aagtagataagctcaagtaagtcaatccaaacagaccctta 42646829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 27043780 - 27043741
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacataccctta 106  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  27043780 agtagataagctcaaataagtcaatccaaacagaccctta 27043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 23676973 - 23676933
Alignment:
Q  52 acaagtacttatagaagtagataagctgaaataagtcaatc 92  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  23676973 acaagtacttatacaagtagataagttcaaataagtcaatc 23676933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 30331871 - 30331902
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaaca 98  Q
    ||||||||||||||||||||||||||||||||    
T  30331871 agtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 37419632 - 37419585
Alignment:
Q  52 acaagtacttatagaagtagataagctgaaataagtcaatccaaacat 99  Q
    |||||| |||||| |||||||||| || ||||||||||||||||||||    
T  37419632 acaagtgcttatataagtagataaactcaaataagtcaatccaaacat 37419585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 2790337 - 2790389
Alignment:
Q  46 agtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    ||||| |||||||||||||  |||||||||| | ||||||| |||||||||||    
T  2790337 agtctgacaagtacttatactagtagataagttcaaataagccaatccaaaca 2790389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 6772482 - 6772446
Alignment:
Q  68 gtagataagctgaaataagtcaatccaaacataccct 104  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  6772482 gtagataagctcaaataagtcaatccaaacatgccct 6772446  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 9996833 - 9996889
Alignment:
Q  42 aagcagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    ||||||||| ||||||||||||   ||| |||||||| ||||||||||| |||||||    
T  9996833 aagcagtctcacaagtacttatgctagttgataagctcaaataagtcaagccaaaca 9996889  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 32582848 - 32582897
Alignment:
Q  58 acttatagaagtagataagctgaaataagtcaatccaaacatacccttat 107  Q
    |||||| | ||||||||| || ||||||||||||||||||||||| ||||    
T  32582848 acttatggtagtagataaactcaaataagtcaatccaaacatacctttat 32582897  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 46407861 - 46407894
Alignment:
Q  66 aagtagataagctgaaataagtcaatccaaacat 99  Q
    ||||||||||||| ||||||||||||||||||||    
T  46407861 aagtagataagctcaaataagtcaatccaaacat 46407894  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 50211833 - 50211886
Alignment:
Q  45 cagtcttacaagtacttatagaagtagataagctgaaataagtcaatccaaaca 98  Q
    ||||||||||||| |||||   |||||||||||| |||||||| ||||||||||    
T  50211833 cagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaaca 50211886  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 8007617 - 8007585
Alignment:
Q  66 aagtagataagctgaaataagtcaatccaaaca 98  Q
    ||||||||||||| |||||||||||||||||||    
T  8007617 aagtagataagctaaaataagtcaatccaaaca 8007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 26990175 - 26990143
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacat 99  Q
    |||||||||||| ||||||||||||||||||||    
T  26990175 agtagataagctcaaataagtcaatccaaacat 26990143  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 31615509 - 31615473
Alignment:
Q  68 gtagataagctgaaataagtcaatccaaacataccct 104  Q
    |||||||| || |||||||||||||||||||||||||    
T  31615509 gtagataaactcaaataagtcaatccaaacataccct 31615473  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 21248 - 21208
Alignment:
Q  67 agtagataagctgaaataagtcaatccaaacatacccttat 107  Q
    |||||||||||| | ||||||||||||||||||||| ||||    
T  21248 agtagataagctcagataagtcaatccaaacatacctttat 21208  T

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