View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14332_low_18 (Length: 352)
Name: NF14332_low_18
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 5677186 - 5676861
Alignment:
| Q |
18 |
ctccataggtagaaatctccttgtttgcaaaagaaaagaagaacacaattactatgattgtagtatataagatacatgttttgaaaaatgcgaacattaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5677186 |
ctccataggtagaaatctcct-gtttgcaaaagaaaagaagaacacaattactatgattgcagtatataagatacatgttttgaaaaatgcgaacattaa |
5677088 |
T |
|
| Q |
118 |
ttagacctttatacactcaaaagcattgtaacttagcttttcttttcttgagattcaatccttaattcttaataattttttcttttgttcgagcaggata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5677087 |
ttagacctttatacactcaaaagcattgtaacttagcttttcttttcttgagattcaatccttaattcttaataattttttctttctttcgagcaggata |
5676988 |
T |
|
| Q |
218 |
tatttggaaagggaaggaagaaaattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgc |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5676987 |
tatttggaaagggaaggaagaagattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgc |
5676888 |
T |
|
| Q |
318 |
aatgtcagtaagctttctatctgtgct |
344 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
5676887 |
aatgtcagtaagctttctatctatgct |
5676861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 39778829 - 39778956
Alignment:
| Q |
208 |
gagcaggatatatttggaaagggaaggaagaaaattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaag |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | || ||| || |||||||||| ||||| |||||||||||| | |||||||||| | |||| | |
|
|
| T |
39778829 |
gagcaggagatatttggaaagggaaggaaggatatagaagcacatgaagagcatgagaagagacttattttagagatactagtgagccttatgccaaggg |
39778928 |
T |
|
| Q |
308 |
agaagaatgcaatgtcagtaagctttct |
335 |
Q |
| |
|
||||||||||||| || || |||||||| |
|
|
| T |
39778929 |
agaagaatgcaatatctgtcagctttct |
39778956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University