View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_low_22 (Length: 290)
Name: NF14332_low_22
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_22 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 14188318 - 14188058
Alignment:
| Q |
12 |
actgggcggtgttttactactccggaagcttcttcatcttcccttctaaaggtttgctctctcaatctaagaaaattgcggccaccgtattttcatttat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
14188318 |
actgggcggtgttttactactccggaagcttcttcatcttcccttctaaaggttatctctctcaatctaagaaaactgcggccatcgtattttcatttat |
14188219 |
T |
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| Q |
112 |
atatttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaaaccttcaacactatctaattttatttgtcttaaaatatacaaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14188218 |
atatttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacctttcaacactatctaattttatttgtcttaaaatatacaaag |
14188119 |
T |
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| Q |
212 |
aaaatccaattaaagtaacacttcagaccaatattgcaaagcttcataactgtatcgtatc |
272 |
Q |
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| T |
14188118 |
aaaattcaattaaagtaacacttcagaccaatattgcaaagcttcataactgtatcgtatc |
14188058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 31138 - 30878
Alignment:
| Q |
12 |
actgggcggtgttttactactccggaagcttcttcatcttcccttctaaaggtttgctctctcaatctaagaaaattgcggccaccgtattttcatttat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
31138 |
actgggcggtgttttactactccggaagcttcttcatcttcccttctaaaggtatgctctctcaatctaagaaaactgtggccaccgtattttcatttat |
31039 |
T |
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| Q |
112 |
atatttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaaaccttcaacactatctaattttatttgtcttaaaatatacaaag |
211 |
Q |
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| T |
31038 |
atgtttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaatactatctaattttatttgtcttaaaatatacaaag |
30939 |
T |
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| Q |
212 |
aaaatccaattaaagtaacacttcagaccaatattgcaaagcttcataactgtatcgtatc |
272 |
Q |
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| T |
30938 |
aaaatccaattaaagcaacacttcacaccaatattgcaaagcttcataactgtatcgtatc |
30878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 39439531 - 39439277
Alignment:
| Q |
18 |
cggtgttttactactccggaagcttcttcatcttcccttctaaaggtttgctctctcaatctaagaaaattgcggccaccgtattttcatttatatattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
39439531 |
cggtgttttactactccggaagcttcttcatcttcacttctaaaggtctgctctctcaatctaagaaaattgcggccaccatattttcatttatatgttt |
39439432 |
T |
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| Q |
118 |
gctcacttcttcactctcttgtattattaaatatatgcattcaactaaaaaccttcaacactatctaattttatttgtcttaaaatatacaaagaaaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39439431 |
gctcacttcttcactctcttgtattattaaatatatgcattcaactaaaacccttcaacactttctaattttatttgtcttaaaatatacaaagaaaatc |
39439332 |
T |
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| Q |
218 |
caattaaagtaacacttcagaccaatattgcaaagcttcataactgtatcgtatc |
272 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||| |||| |||| |
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| T |
39439331 |
caattaaagcaacacttctgaccaatattgcaaagcttcataactatatcatatc |
39439277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 19814833 - 19814575
Alignment:
| Q |
12 |
actgggcggtgttttactactccggaagcttcttcatcttcccttctaaaggtttgctctctcaatctaagaaaattgcggccaccgtattttcatttat |
111 |
Q |
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|||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
19814833 |
actgagcggggttttactactccgaaagcttcttcatcttcccttctaaaggtctgctctctcaatctaagaaaactgcggccaccgtattttaatttat |
19814734 |
T |
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| Q |
112 |
atatttgctcacttcttcactctcttgtattattaaatatatgcattcaactaaaaaccttcaacact-atctaattttatttgtcttaaa--atataca |
208 |
Q |
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|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||| |
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| T |
19814733 |
atgtttgctcatttcttcactcttttgtattattaaatatatgcattcaactaaaacccttcaacactaatctaattttatttgtcataaaatatataca |
19814634 |
T |
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| Q |
209 |
aagaaaatccaattaaagtaacacttcagaccaatattgcaaagcttcataactgtatc |
267 |
Q |
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| T |
19814633 |
aagaaaattcaattaaagcaacgcctcataccaatattgcaaagcttcataattgtatc |
19814575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 39096629 - 39096393
Alignment:
| Q |
22 |
gttttactactccggaagcttcttcatcttcccttctaaaggtttgctctctcaatctaagaaaattgcggccaccgtattttcatttatatatttgctc |
121 |
Q |
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||||||||||| | ||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||| || |||||||||| || ||||||| |
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| T |
39096629 |
gttttactactgcagaaacttcttcatcttcccttt----ggtctgctctctcaatttaagaaaattgcggccccc-tattttcattataatgtttgctc |
39096535 |
T |
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| Q |
122 |
acttcttcactctcttgtattattaaatatatgcattcaactaaaaaccttcaacactatctaattttatttgtcttaaaatatacaaagaaaatccaat |
221 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
39096534 |
acctcttcactgtcttgtattattaaatatatgcattcaactaaaatccttcaaaactgtctaattccatttgtcttaatatatacaaagaaaatccaat |
39096435 |
T |
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| Q |
222 |
taaagtaacacttcagaccaatattgcaaagcttcataactg |
263 |
Q |
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||||| ||| ||||| ||||||||||||||||||| |||||| |
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| T |
39096434 |
taaagcaacgcttcataccaatattgcaaagcttcgtaactg |
39096393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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