View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_low_23 (Length: 285)
Name: NF14332_low_23
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_23 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 596503 - 596349
Alignment:
| Q |
1 |
agaagaagagatacatagaggtataagcaagaagaacatgtgagaaaaacaatgaaatgaa-----atgatcatgattttttctacgttccgacgatatt |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
596503 |
agaagaagagatacatagaggtataagcaagaagaacatgtgagaaaaacaatgaaatgaaatgaaatgatcatgattttttctacgttacgacgatatt |
596404 |
T |
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| Q |
96 |
tacccaacaatc-aaatgtaatatacaaa--taacattaaatatcaaataaatga |
147 |
Q |
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| T |
596403 |
tacccgacaatcaaaatgtaatatataaatgtaacattaaatatcaaataaatga |
596349 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 18299888 - 18299825
Alignment:
| Q |
2 |
gaagaagagatacatagaggtataagcaagaagaacatgtgagaaaaacaatgaaatgaaatgatc |
67 |
Q |
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| T |
18299888 |
gaagaagagataca--gaggtataagcaagaggaacatgtgagaaaaacaatgaaatgaaatgatc |
18299825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 10454435 - 10454477
Alignment:
| Q |
108 |
aaatgtaatatacaaa---taacattaaatatcaaataaatga |
147 |
Q |
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| T |
10454435 |
aaatgtaatatacaaaatgtaacattaaatatcaaataaatga |
10454477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 61038 - 61086
Alignment:
| Q |
17 |
agaggtataagcaagaagaacatgtgagaaaaacaatgaaatgaaatga |
65 |
Q |
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| T |
61038 |
agaggtataagtaagaggaacatgtgagaaaaacaatgaaatgaaatga |
61086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 48073934 - 48073893
Alignment:
| Q |
108 |
aaatgtaatatacaaat--aacattaaatatcaaataaatga |
147 |
Q |
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| T |
48073934 |
aaatgtaatatacaaatgtaacattaaatatcaaataaatga |
48073893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 54409424 - 54409465
Alignment:
| Q |
108 |
aaatgtaatatacaaat--aacattaaatatcaaataaatga |
147 |
Q |
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| T |
54409424 |
aaatgtaatatacaaatgtaacattaaatatcaaataaatga |
54409465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 2380630 - 2380593
Alignment:
| Q |
23 |
ataagcaagaagaacatgtgagaaaaacaatgaaatga |
60 |
Q |
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| T |
2380630 |
ataagcgaaaagaacatgtgagaaaaacaatgaaatga |
2380593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 34858008 - 34858052
Alignment:
| Q |
108 |
aaatgtaatatacaaata--acattaaatatcaaataaatgaatc |
150 |
Q |
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| T |
34858008 |
aaatgtaatatacaaatataacattaaatgtcaaataaatgaatc |
34858052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 4640385 - 4640341
Alignment:
| Q |
108 |
aaatgtaatatacaaat--aacattaaatatcaaataaatgaatc |
150 |
Q |
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| T |
4640385 |
aaatgtaatatacaaatgtaacattaaatgtcaaataaatgaatc |
4640341 |
T |
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