View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14332_low_29 (Length: 240)

Name: NF14332_low_29
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14332_low_29
NF14332_low_29
[»] chr5 (3 HSPs)
chr5 (14-234)||(536899-537119)
chr5 (18-205)||(4557935-4558133)
chr5 (14-90)||(536815-536891)
[»] chr7 (6 HSPs)
chr7 (14-234)||(15873882-15874102)
chr7 (16-205)||(21491459-21491659)
chr7 (18-129)||(22077720-22077831)
chr7 (26-90)||(18367412-18367476)
chr7 (26-137)||(48576426-48576538)
chr7 (138-205)||(18367293-18367363)
[»] chr3 (8 HSPs)
chr3 (14-234)||(46404508-46404727)
chr3 (14-204)||(5004687-5004885)
chr3 (14-205)||(16975339-16975515)
chr3 (16-129)||(11967941-11968053)
chr3 (196-234)||(11937787-11937825)
chr3 (196-234)||(16975531-16975569)
chr3 (44-96)||(8730913-8730966)
chr3 (44-96)||(9082800-9082853)
[»] chr6 (6 HSPs)
chr6 (14-234)||(34636272-34636486)
chr6 (14-205)||(25005229-25005429)
chr6 (14-205)||(23260544-23260743)
chr6 (14-205)||(32450228-32450428)
chr6 (102-204)||(10751527-10751637)
chr6 (196-234)||(23260490-23260528)
[»] scaffold0413 (1 HSPs)
scaffold0413 (14-234)||(8925-9154)
[»] chr1 (5 HSPs)
chr1 (14-205)||(35762015-35762217)
chr1 (86-205)||(37667144-37667271)
chr1 (18-129)||(9537406-9537517)
chr1 (18-96)||(16074800-16074879)
chr1 (14-64)||(37667265-37667315)
[»] chr4 (2 HSPs)
chr4 (18-129)||(28969233-28969344)
chr4 (18-205)||(49499101-49499297)
[»] scaffold1838 (1 HSPs)
scaffold1838 (26-129)||(271-374)
[»] chr2 (2 HSPs)
chr2 (14-80)||(32735391-32735457)
chr2 (18-88)||(29270722-29270792)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 536899 - 537119
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536899 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 536998  T
Q  114 atgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatattttagttt 213  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  536999 atgtggaatggcattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagttt 537098  T
Q  214 ggtccatgtggatgatgatgt 234  Q
    |||||||||||||||||||||    
T  537099 ggtccatgtggatgatgatgt 537119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 4558133 - 4557935
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 117  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| ||    
T  4558133 aaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgt 4558034  T
Q  118 ggaatgacattttttctatt--------catatatg--tttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 205  Q
     ||||||| ||| || ||||        ||||||||  ||||||||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  4558033 agaatgacttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 536815 - 536891
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536815 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 15874102 - 15873882
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15874102 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgtt 15874003  T
Q  114 atgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatattttagttt 213  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15874002 ttgtggaatggcattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagttt 15873903  T
Q  214 ggtccatgtggatgatgatgt 234  Q
    |||||||||||||||||||||    
T  15873902 ggtccatgtggatgatgatgt 15873882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 21491659 - 21491459
Alignment:
Q  16 acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttat 115  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||    
T  21491659 acaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttat 21491561  T
Q  116 gtggaatgacattttttctatt--------catatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaat 203  Q
    || ||||||||||| || ||||        ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||    
T  21491560 gtagaatgacatttattttattttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaat 21491461  T
Q  204 at 205  Q
    ||    
T  21491460 at 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22077720 - 22077831
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 117  Q
    |||||||||||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22077720 aaaacaactaaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgt 22077819  T
Q  118 ggaatgacattt 129  Q
     |||||||||||    
T  22077820 agaatgacattt 22077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 18367476 - 18367412
Alignment:
Q  26 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 90  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367476 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 48576426 - 48576538
Alignment:
Q  26 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagttt-aattatattttatatgatgtctgtatgataatgttatgtggaatga 124  Q
    ||||||||||||| ||||||||||||||||  | |||| |||||||||||||| |||||||| ||||||||||| ||||||||||||| |||  ||||||    
T  48576426 taaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatga 48576525  T
Q  125 cattttttctatt 137  Q
    ||||| |||||||    
T  48576526 catttattctatt 48576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 18367363 - 18367293
Alignment:
Q  138 catatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 205  Q
    |||||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367363 catatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 46404727 - 46404508
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46404727 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgtt 46404628  T
Q  114 atgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatattttagttt 213  Q
     ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46404627 ttgtggaatggca-tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagttt 46404529  T
Q  214 ggtccatgtggatgatgatgt 234  Q
    |||||||||||||||||||||    
T  46404528 ggtccatgtggatgatgatgt 46404508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 5004885 - 5004687
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004885 gaacaaaacaactaaaatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 5004786  T
Q  114 atgtggaatgacat--------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 204  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004785 atgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 5004687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 16975339 - 16975515
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16975339 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatttt 16975438  T
Q  114 atgtggaatgacattttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 205  Q
    |||||||||||| |                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975439 atgtggaatgacgt----------------tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 11968053 - 11967941
Alignment:
Q  16 acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttat 115  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||      
T  11968053 acaaaaaatctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat-aaaatgttcc 11967955  T
Q  116 gtggaatgacattt 129  Q
    || |||||||||||    
T  11967954 gtagaatgacattt 11967941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 11937825 - 11937787
Alignment:
Q  196 atgaaaatattttagtttggtccatgtggatgatgatgt 234  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  11937825 atgaaaatattttattttggttcatgtggatgatgatgt 11937787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 16975531 - 16975569
Alignment:
Q  196 atgaaaatattttagtttggtccatgtggatgatgatgt 234  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  16975531 atgaaaatatttcagtttggttcatgtggatgatgatgt 16975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  44 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 96  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  44 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 96  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 34636272 - 34636486
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636272 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 34636371  T
Q  114 atgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatattttagttt 213  Q
    |||||| ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34636372 atgtggcatgacattttttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagttt 34636465  T
Q  214 ggtccatgtggatgatgatgt 234  Q
    |||||||||||||||||||||    
T  34636466 ggtccatgtggatgatgatgt 34636486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 25005229 - 25005429
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25005229 gaacaaaacaactaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatttt 25005328  T
Q  114 atgtggaatgacat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaata 204  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25005329 atgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaata 25005428  T
Q  205 t 205  Q
    |    
T  25005429 t 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 23260743 - 23260544
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23260743 gaacaaaacaactaaaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgtt 23260644  T
Q  114 atgtggaatgacat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaata 204  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  23260643 atgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaata 23260545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 32450428 - 32450228
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32450428 gaacaaaacaactaaaatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgtt 32450329  T
Q  114 atgtggaatgacat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaata 204  Q
    ||||||||||||||        ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  32450328 atgtggaatgacatttattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaata 32450229  T
Q  205 t 205  Q
    |    
T  32450228 t 32450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 10751637 - 10751527
Alignment:
Q  102 tatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 193  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751637 tatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 10751538  T
Q  194 aaatgaaaata 204  Q
    |||||||||||    
T  10751537 aaatgaaaata 10751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 23260528 - 23260490
Alignment:
Q  196 atgaaaatattttagtttggtccatgtggatgatgatgt 234  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  23260528 atgaaaatatttcagtttggttcatgtggatgatgatgt 23260490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 8925 - 9154
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8925 gaacaaaacaactaaaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgtt 9024  T
Q  114 atgtggaatgac---------attttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 204  Q
    ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9025 atgtggaatgacatttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 9124  T
Q  205 ttttagtttggtccatgtggatgatgatgt 234  Q
    ||| || |||||||||||||||||||||||    
T  9125 tttcagattggtccatgtggatgatgatgt 9154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 35762217 - 35762015
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaa--gttattagtttaattatattttatatgatgtctgtatgataatg 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||    
T  35762217 gaacaaaacaactaaaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatg 35762118  T
Q  112 ttatgtggaatgacat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaa 202  Q
    ||||||||||||||||        ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  35762117 ttatgtggaatgacatttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaa 35762018  T
Q  203 tat 205  Q
    |||    
T  35762017 tat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 37667271 - 37667144
Alignment:
Q  86 ttttatatgatgtctgtatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 177  Q
    |||||||||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  178 tgctgataaactaaataaatgaaaatat 205  Q
    ||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatat 37667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 9537517 - 9537406
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 117  Q
    ||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9537517 aaaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgt 9537418  T
Q  118 ggaatgacattt 129  Q
     |||||||||||    
T  9537417 agaatgacattt 9537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 16074800 - 16074879
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 96  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074800 aaaacaattaaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 37667315 - 37667265
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttata 64  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37667315 gaacaaaacaactaaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 28969344 - 28969233
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 117  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  28969344 aaaacaactaaaatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgt 28969245  T
Q  118 ggaatgacattt 129  Q
     |||||||||||    
T  28969244 agaatgacattt 28969233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 49499101 - 49499297
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 117  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |  |||||| ||    
T  49499101 aaaaaaactaaaatatgaatttatatagtaaaatttaaccttttataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgt 49499199  T
Q  118 ggaatgacattttttctatt--------catatatg-tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 205  Q
     ||||||||||| || ||||        |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499200 agaatgacatttattttattttgatatgcatatatgttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 271 - 374
Alignment:
Q  26 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgac 125  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  271 taaaatataaatctatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgcc 370  T
Q  126 attt 129  Q
    ||||    
T  371 attt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 32735457 - 32735391
Alignment:
Q  14 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 80  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735457 gaacaaaacaactaaaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 29270722 - 29270792
Alignment:
Q  18 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 88  Q
    ||||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270722 aaaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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