View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14332_low_3 (Length: 651)

Name: NF14332_low_3
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14332_low_3
NF14332_low_3
[»] chr7 (9 HSPs)
chr7 (14-635)||(20291588-20292209)
chr7 (272-471)||(20092862-20093059)
chr7 (562-629)||(20295964-20296031)
chr7 (341-399)||(20296431-20296490)
chr7 (245-280)||(20296854-20296889)
chr7 (245-281)||(20064741-20064777)
chr7 (248-280)||(20229469-20229501)
chr7 (248-280)||(20262052-20262084)
chr7 (350-378)||(20271031-20271059)
[»] chr4 (4 HSPs)
chr4 (272-505)||(40821910-40822136)
chr4 (36-202)||(40821649-40821817)
chr4 (547-635)||(40822214-40822294)
chr4 (245-277)||(40821379-40821411)


Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 14 - 635
Target Start/End: Complemental strand, 20292209 - 20291588
Alignment:
Q  14 cagagagcatatttgaactgaaacccattatatgatcaacaagtagactatgatacaaaaacaccactctttcttattactaatgatttgagatttcctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  20292209 cagagagcatatttgaactgaaacccattatatgatcaacaagtagactatgatacaaaaaaaccactctttcttattaataatgatttgagatttcctt 20292110  T
Q  114 cttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaatatcatttcagaaaattaatgttctttgagacatttcacttttttcctgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  20292109 cttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaatattatttcaaaaaattaatgttctttgagacatttcactttttttctgct 20292010  T
Q  214 gactgttttttatttcataaatcaactgtgtatcttcagatattgtgacagtcccattagaatcatttctttatccaaatttttcttggtcaggtgcttt 313  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20292009 ggctgttttttatttcataaatcaactgtgtatcttcagatattgtgacagtcccattagaatcatttctttattcaaatttttcttggtcaggtgcttt 20291910  T
Q  314 gtaatcgataaaataatattagat-tacaatgttttcaaaaactataactttgaatcattcattttctactcaaagacaacctcatcaaatagtttatga 412  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20291909 gtaatctataaaataatattagttgtacaaggttttcaaaaactataactttgaatcattcattttctactcaaagacaacctcatcaaatagtttatga 20291810  T
Q  413 gtatgatcctaaatagtcaatgattctggaatataaaaactatatcattttcataaaactataactttctgatttgcaaatttacttccttaaaaaatac 512  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20291809 gtatgatcctaaacagtcaatgattctggaatataaaaactatatcattttcataaaactataactttct-atttgcaaatttacttccttaaaaaatac 20291711  T
Q  513 aatatcatccgtttgactatactgcatgaagaacgtgtaaaacaaggcaaaattagttatgtacaactttacttcgcatggctactttcaccctacatag 612  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20291710 aatatcatccgtttgactatactgcattaagaacgtgtaaaacaaggcaaaattagttatgtacaactttacttcgcatggctgctttcaccctacatag 20291611  T
Q  613 acacctctcttacaacaccataa 635  Q
    |||||||||||||||||||||||    
T  20291610 acacctctcttacaacaccataa 20291588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 272 - 471
Target Start/End: Original strand, 20092862 - 20093059
Alignment:
Q  272 agaatcatttctttatccaaatttttcttggtcaggtgctttgtaatcgataaaataatattagattac-aatgttttcaaaaactataactttgaatca 370  Q
    |||||||||| |||||  |||| | |||||||||||||| | || ||||||||||| |||| || |  | ||||||||||||| |||||| |||||||||    
T  20092862 agaatcatttttttattaaaatatgtcttggtcaggtgcctcgttatcgataaaattatatcagttatctaatgttttcaaaatctataattttgaatca 20092961  T
Q  371 ttcattttctactcaaagacaacctcatcaaatagtttatgagtatgatcctaaatagtcaatgattctggaatataaaaactatatcattttcataaaa 470  Q
    || ||||||||||||||||||||||| || |||  ||||| |||||| ||||||| || ||| || |||   ||| ||| ||||||||||||||||||||    
T  20092962 tttattttctactcaaagacaacctcgtctaatgatttatcagtatgttcctaaaaagccaaggaatct---atagaaatactatatcattttcataaaa 20093058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 562 - 629
Target Start/End: Complemental strand, 20296031 - 20295964
Alignment:
Q  562 aaattagttatgtacaactttacttcgcatggctactttcaccctacatagacacctctcttacaaca 629  Q
    |||| |||||| |||| || |||||  ||||||||| ||| |||||||| ||||||||||||||||||    
T  20296031 aaatcagttatctacacctctactttacatggctaccttctccctacatggacacctctcttacaaca 20295964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 20296490 - 20296431
Alignment:
Q  341 aatgttttcaaaaactataactttgaatcattcattttct-actcaaagacaacctcatc 399  Q
    |||||||| |||||||||||| ||||||| |||||||| | | |||||||||||||||||    
T  20296490 aatgtttttaaaaactataaccttgaatcgttcattttttcattcaaagacaacctcatc 20296431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 20296889 - 20296854
Alignment:
Q  245 atcttcagatattgtgacagtcccattagaatcatt 280  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20296889 atcttcagatattgtgacaatcccattagaatcatt 20296854  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 20064741 - 20064777
Alignment:
Q  245 atcttcagatattgtgacagtcccattagaatcattt 281  Q
    |||||||||||| |||| |||||||||||||||||||    
T  20064741 atcttcagatatggtgatagtcccattagaatcattt 20064777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 20229501 - 20229469
Alignment:
Q  248 ttcagatattgtgacagtcccattagaatcatt 280  Q
    |||||||||||||||| ||||||||||||||||    
T  20229501 ttcagatattgtgacaatcccattagaatcatt 20229469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 20262084 - 20262052
Alignment:
Q  248 ttcagatattgtgacagtcccattagaatcatt 280  Q
    |||||||||||||||| ||||||||||||||||    
T  20262084 ttcagatattgtgacaatcccattagaatcatt 20262052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 20271059 - 20271031
Alignment:
Q  350 aaaaactataactttgaatcattcatttt 378  Q
    |||||||||||||||||||||||||||||    
T  20271059 aaaaactataactttgaatcattcatttt 20271031  T

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Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 272 - 505
Target Start/End: Original strand, 40821910 - 40822136
Alignment:
Q  272 agaatcatttctttatccaaatttttcttggtcaggtgctttgtaatcgataaaataatattagat-tacaatgttttcaaaaactataactttgaatca 370  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  40821910 agaatcatttctttattcaaaattttcttggtcaggtgccttgtaaccgataaaataatattagttgtacaatgttttcaaaaaccataactttgaatca 40822009  T
Q  371 ttcattttctactcaaagacaacctcatcaaatagtttatgagtatgatcctaaatagtcaatgattctggaatataaaaac--tatatcattttcataa 468  Q
    ||||||||||||||  |||||||||||||||||||||||| ||        |||| | |||||||| || ||||||||||||  ||||||||||||||||    
T  40822010 ttcattttctactc--agacaacctcatcaaatagtttatcag--------taaaaattcaatgatcctagaatataaaaactatatatcattttcataa 40822099  T
Q  469 aactataactttctgatttgcaaatttacttccttaa 505  Q
    || |||||||||||||||||| |||||| ||||||||    
T  40822100 aattataactttctgatttgccaatttatttccttaa 40822136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 40821649 - 40821817
Alignment:
Q  36 acccattatatgatcaacaagtagactatgatacaaaaac-accactctttcttattactaatgatttgagatttccttcttaacgtcaagagtctaaaa 134  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||   ||||| |||||||||||||||    
T  40821649 acccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgatttgagatttc---cttaaagtcaagagtctaaaa 40821745  T
Q  135 aatcacaggtaaatcaaagttctaaaaa----tatcatttcagaaaattaatgttctttgagacatttcact 202  Q
    ||||||| ||||||||  ||||| ||||    |||||||| |  || |||||||| |||||| |||||||||    
T  40821746 aatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcact 40821817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 40822214 - 40822294
Alignment:
Q  547 gtgtaaaacaaggcaaaattagttatgtacaactttacttcgcatggctactttcaccctacatagacacctctcttacaacaccataa 635  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||| ||||| |||||||||||||||||||||||    
T  40822214 gtgtaaaacaaggcaaaattagttatgtacaactttactt--------aactttcacccaacatatacacctctcttacaacaccataa 40822294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 40821379 - 40821411
Alignment:
Q  245 atcttcagatattgtgacagtcccattagaatc 277  Q
    |||||||||||||||||||||||||||||||||    
T  40821379 atcttcagatattgtgacagtcccattagaatc 40821411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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