View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_low_31 (Length: 237)
Name: NF14332_low_31
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 12356214 - 12356064
Alignment:
| Q |
72 |
caagcaacacacttatatgccatttgatgccacaaaagcaaattcgataaccactatgcttggttcttgtgatctttgtaaaactgtaatcacattcctc |
171 |
Q |
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| T |
12356214 |
caagcaacacgcttatatgccatttgatgccacaaaagcaaattcgataaccactatgcttggctcttgtgatctttgtaaaactgtaattacattcctc |
12356115 |
T |
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| Q |
172 |
atggataactctaatcatctcaatttgattttcaaatttcgaaagtgcgta |
222 |
Q |
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| T |
12356114 |
atggataactctaatcatctcaatttgatttgcaaatttcgaaagtgcgta |
12356064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 12395109 - 12395021
Alignment:
| Q |
86 |
atatgccatttgatgccacaaaagcaaattcgataaccactatgcttggttcttgtgatctttgtaaaactgtaatcacattcctcatg |
174 |
Q |
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| T |
12395109 |
atataccatttgatgctacaaaagcaaatgccattacaactatgcttggttctcgcgaacttggtaaagctgtaatcacattcctcatg |
12395021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 14853396 - 14853464
Alignment:
| Q |
7 |
aaaaatggattatattaacattgcaaaa-tgatatggttagcacaaggtgtcccaaaaaaccaccgcaa |
74 |
Q |
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| T |
14853396 |
aaaaatggattatattaacattgcaaaagtgatatcgtcagcaaaaggtgtgccaagaaaccaccgcaa |
14853464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 15644702 - 15644767
Alignment:
| Q |
6 |
caaaaatggattatattaacattgcaaaa-tgatatggttagcacaaggtgtcccaaaaaaccaccg |
71 |
Q |
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| T |
15644702 |
caaaaatgaattatattaac-ttgcaaaagtgatatcgttagcacaaggtgtgccaagaaaccaccg |
15644767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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