View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_low_6 (Length: 586)
Name: NF14332_low_6
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 208 - 568
Target Start/End: Original strand, 27729937 - 27730292
Alignment:
| Q |
208 |
tccaatccatagtttaacaaaactaaaaatgtgtaaattcaattatgtcaatcctatccatgatttgttacatttgatagttaagttaatccaactcatg |
307 |
Q |
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| T |
27729937 |
tccaatccatagtttaacaaaactaaaaatgtgtaaattcaattatgtcaatcctatccatgatttgttacatttgatagttaagttaatccaactcatg |
27730036 |
T |
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| Q |
308 |
atttgatgaattcagtcatgttcattcaaaaaacaaaatgaacaaattaagttacgtgtactagttcgagcgacattgccatatgctagtcgccaaattt |
407 |
Q |
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| T |
27730037 |
atttgatgaattcagttatgttaattaaaaaaa----atgaacaaatta-gtaacatgtactagttcgagcgacattgccatatgctagtcgccaaattt |
27730131 |
T |
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| Q |
408 |
atgactatacttcaacctatattatgactacattagtcgataaaatgaattaattttgttactgtaacaaaattggagcttggtaagtcaatgatactat |
507 |
Q |
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| T |
27730132 |
atgactatacttaaacctatattatgactacattagtggataaaatgaattaattttgttactgtaacaaaattgctgcttggtaagtcaatgatactat |
27730231 |
T |
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| Q |
508 |
attgtaatcctctttgctttatttaatgatgaactgtaaaaataaataaatcatagagaca |
568 |
Q |
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| T |
27730232 |
attgtaatcctctttgctttatttaatgatgaactgtaaaaataaataaatcatagagaca |
27730292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 27729795 - 27729835
Alignment:
| Q |
16 |
aaaataggaagaaaaaggaaagacaaaaatactcttaattc |
56 |
Q |
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| T |
27729795 |
aaaataggaagaaaaaggaaagacaaaaatactcttaattc |
27729835 |
T |
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