View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14332_low_8 (Length: 486)
Name: NF14332_low_8
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 119 - 476
Target Start/End: Original strand, 30465161 - 30465521
Alignment:
| Q |
119 |
acaaaccaaaagagtgatgacgaaggcatatacctatgacaagccacaagcatacccttgcgtcaccaccaaacagtctatcctgctaaagaacagccta |
218 |
Q |
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| T |
30465161 |
acaaaccaaaagagtgatgatgaaggcatatacctatgacaaaccacaagcatacccttgcgtcaccaccaaacagcctatcctgctaaagaacagccta |
30465260 |
T |
|
| Q |
219 |
aacaccttgtaagagaccaacaagcacctcccaaacacaagcaaaaacctccaaaaagctgcccagcaagcacaaccaaatagcgctacagagagcggcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30465261 |
aacaccttgtaagagaccaacaagcacctcccaaacacaagcaaaaacctccaaaaagctgcccagcaagcacaaccaaatagcgctacagagagcggcc |
30465360 |
T |
|
| Q |
319 |
agcagagctattaaaggccaactaaaaatcgcaattcaaactttgattcatcagattgtggaaatctaacatcttttgctagacttcaccccgttagtaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30465361 |
agcagagctattaaaggccaactaaaaatcgcaactcaaactttgattcatcagattgtggaaatctaacatcttttgctagagttcaccccgttagtaa |
30465460 |
T |
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| Q |
419 |
agtatgcatcacctttattcatcaaattgtta---tatgtacttgtaaacatagagaatta |
476 |
Q |
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| T |
30465461 |
agtatgcatcacctttattcatcaaattgttatattatgtacttgtaaacatagagaatta |
30465521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 30465031 - 30465073
Alignment:
| Q |
22 |
caaaatattattaaccaacaagcactaataagctcgggtgaag |
64 |
Q |
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| T |
30465031 |
caaaatattattaaccaacaagcactaataagctcgggtgaag |
30465073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 30655752 - 30655819
Alignment:
| Q |
124 |
ccaaaagagtgatgacgaaggcatatacctatgacaagccacaagcatacccttgcgtcaccaccaaa |
191 |
Q |
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|||||||||| |||||| ||||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
30655752 |
ccaaaagagtaatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacaccaaa |
30655819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 287
Target Start/End: Original strand, 40930980 - 40931144
Alignment:
| Q |
124 |
ccaaaagagtgatgacgaaggcatatacctatgacaagccacaagcatacccttgcgtcaccaccaaaca--gtctatcctgctaaagaacagcctaaac |
221 |
Q |
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|||||||||| |||||| |||||||||| |||||| | || || ||||| || ||||||| ||||||| | ||| | |||||| ||| |||||||||| |
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| T |
40930980 |
ccaaaagagttatgacgcaggcatatacatatgacgaaccgcatgcatagccctgcgtcaacaccaaaaacggtcgagcctgctgaagcgcagcctaaac |
40931079 |
T |
|
| Q |
222 |
accttgtaagagaccaacaagcacctcccaaacacaagcaaaaacctccaaaaagctgcccagcaa |
287 |
Q |
| |
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|||| ||||||||||| || | |||| |||| ||| |||||| | ||||| ||||||| ||||| |
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| T |
40931080 |
acctatcaagagaccaac-aggaactccaaaacccaaccaaaaaacaccaaacagctgcctagcaa |
40931144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 55133262 - 55133339
Alignment:
| Q |
130 |
gagtgatgacgaaggcatatacctatgacaagccacaagcatacccttgcgtcaccaccaaacagtctatcctgctaaa |
208 |
Q |
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|||||||||| |||||||||||||| |||| ||||| ||||||||||||||||| || |||| ||||||||||||| |
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| T |
55133262 |
gagtgatgacacaggcatatacctataacaaagcacaatcatacccttgcgtcacc-cctaacaacctatcctgctaaa |
55133339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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