View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14332_low_9 (Length: 435)
Name: NF14332_low_9
Description: NF14332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14332_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 8101665 - 8101456
Alignment:
| Q |
12 |
aagcataggatccaatcacataattagttgcattttggattttgtgaagactcagttatgagctttt-gtttgaagaaaaatactaacgactgcctttct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||| |
|
|
| T |
8101665 |
aagcataggatccaatcacataattagttgcattttggattttgtgaagactcagttatgagctttttgtttgaaggaaaatattaacaactgcctttct |
8101566 |
T |
|
| Q |
111 |
gatactctttaaggatttttaaaagtatatatttatgaaaatatgtgtatttctttcgttggaatttgtaacatttgattttttgaataaataatttcta |
210 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8101565 |
gacactctttaaagatttttaaaagtatatatttatgaaaatatgtgtatttcttttgttgaaatttgtaacatttgattttttgaatgaataatttcta |
8101466 |
T |
|
| Q |
211 |
aatttaggat |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
8101465 |
aatttaggat |
8101456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 8100131 - 8100076
Alignment:
| Q |
362 |
taaacacgagttttagagctatacgttgtaagaaatgtagaactaaggtatgggca |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8100131 |
taaacacgagttgtagagctatacgttgtaagaaatgtagaactaaggtatgggca |
8100076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 8100524 - 8100475
Alignment:
| Q |
249 |
ttgattgacaccgtatatgtttgcttttaaaatgtctgagttgttgtttg |
298 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
8100524 |
ttgattgacaccgtaaatgtttgcttttaaaatgtttgagttgttgtttg |
8100475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 815054 - 815003
Alignment:
| Q |
169 |
ttggaatttgtaacatttgattttttgaataaataatttctaaatttaggat |
220 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
815054 |
ttggaatttgtgacatttgatttttttaaaaaataatttctaaatttgggat |
815003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 41583654 - 41583550
Alignment:
| Q |
116 |
tctttaaggatttttaaaagtatatatttatgaaaatatgtgtatttctttcgttggaatttgtaacatttgattttttgaataaataatttctaaattt |
215 |
Q |
| |
|
|||||||| || || || |||| || ||||||||||| |||||||| | | ||||||||||||| |||| | |||||||| |||||||||||||||| |
|
|
| T |
41583654 |
tctttaagaatcttcaatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaattt |
41583555 |
T |
|
| Q |
216 |
aggat |
220 |
Q |
| |
|
|||| |
|
|
| T |
41583554 |
gggat |
41583550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 7574231 - 7574273
Alignment:
| Q |
173 |
aatttgtaacatttgattttttgaataaataatttctaaattt |
215 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
7574231 |
aatttgtaacatttgatttttttaagaaatattttctaaattt |
7574273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University