View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14333_low_1 (Length: 761)
Name: NF14333_low_1
Description: NF14333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14333_low_1 |
 | |
|
| [»] scaffold0635 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0635 (Bit Score: 200; Significance: 1e-108; HSPs: 2)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 180 - 666
Target Start/End: Complemental strand, 1435 - 931
Alignment:
| Q |
180 |
aagaatatttgtgatgttaaagagggagtaggtgtgcatgaggtaggttttggtttgaggttaattttgtgtgtcacgtaggtaatggtgaaagttcttc |
279 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||| ||||| ||||| |||||| || |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
1435 |
aagaacatttgtgatgttaaaaagggagtaggcgtgcctgaggcaggtt--ggtttgcggctaatttggtgtgtcacgtaggtaatggtgaaagtttctc |
1338 |
T |
|
| Q |
280 |
tttttgaaacgatatttggttagaaggggtttcattatgtcttggat-ttagtcatttgtttgatttgtttgttgactctaatataattgttg------- |
371 |
Q |
| |
|
||||||||||||| |||| | ||||||| |||||||||| || || ||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1337 |
tttttgaaacgatccttggctggaagggggttcattatgtgttaaatattagttgtatgtttgatttgtttgttgactctagtataattgttgctgagac |
1238 |
T |
|
| Q |
372 |
-------ttggggtgggggattgaggacagaggttggagatggaggaggagacttttctcttgggaagaggagttgattgtggaatgttgttctctgtta |
464 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
1237 |
aaggagattggggtggggggttgacgacagaggttggagatggaggaggagacttttctcttgggaagaggagctggttgtggaacgttgttctttgtta |
1138 |
T |
|
| Q |
465 |
gaaaatattgttttgcaagaatcaatttcggatacttggtcttggaaacttgatcaagctcaaggttattttgttaaaggaatttacaacttgttgacgc |
564 |
Q |
| |
|
|| |||||||||||||| |||||||||| |||||| |||||||| ||| |||||| || ||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
1137 |
gacaatattgttttgcaggaatcaattttggatacctggtcttgaaaaattgatccaggtcaaggttattctgttaaaggaatttacaatttgttgatcc |
1038 |
T |
|
| Q |
565 |
atgatgatcattaagtctaaacacctct-atggagatcatttggaacaaatcagtatccc----tcaaagtgtcactttttgcaaggagactactgaaaa |
659 |
Q |
| |
|
||||||||||| ||||| || ||||| | | |||||||||||| ||||||| ||| || | | |||||||||||||||||| ||| || ||||| || |
|
|
| T |
1037 |
atgatgatcatcaagtccaagcacctttcacggagatcatttgcaacaaattagtgtctcttaattaaagtgtcactttttgcatggacaccactgataa |
938 |
T |
|
| Q |
660 |
ataggct |
666 |
Q |
| |
|
||||||| |
|
|
| T |
937 |
ataggct |
931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 1567 - 1435
Alignment:
| Q |
1 |
ccttccatttctaaatatgagattttagtctactagctaatttaatattgtattgtttgaaaaatagtgttgtagattacatgttgattagggtgggtta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| ||||||||||| | ||||||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
1567 |
ccttccatttctaaatatgagattttagtctcttatctaattttatattgtattgctggaaaaatggtgttggagattacttgttgattagggtgggtta |
1468 |
T |
|
| Q |
101 |
tgacacaaaatcttgacagcaaaatatggggta |
133 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||| |
|
|
| T |
1467 |
tgacataaagtcttagcagcaaaatatggggta |
1435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 180 - 666
Target Start/End: Original strand, 10107349 - 10107853
Alignment:
| Q |
180 |
aagaatatttgtgatgttaaagagggagtaggtgtgcatgaggtaggttttggtttgaggttaattttgtgtgtcacgtaggtaatggtgaaagttcttc |
279 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||| ||||| ||||| |||||| || |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
10107349 |
aagaacatttgtgatgttaaaaagggagtaggcgtgcctgaggcaggtt--ggtttgcggctaatttggtgtgtcacgtaggtaatggtgaaagtttctc |
10107446 |
T |
|
| Q |
280 |
tttttgaaacgatatttggttagaaggggtttcattatgtcttggat-ttagtcatttgtttgatttgtttgttgactctaatataattgttg------- |
371 |
Q |
| |
|
||||||||||||| |||| | ||||||| |||||||||| || || ||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10107447 |
tttttgaaacgatccttggctggaagggggttcattatgtgttaaatattagttgtatgtttgatttgtttgttgactctagtataattgttgctgagac |
10107546 |
T |
|
| Q |
372 |
-------ttggggtgggggattgaggacagaggttggagatggaggaggagacttttctcttgggaagaggagttgattgtggaatgttgttctctgtta |
464 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
10107547 |
aaggagattggggtggggggttgacgacagaggttggagatggaggaggagacttttctcttgggaagaggagctggttgtggaacgttgttctttgtta |
10107646 |
T |
|
| Q |
465 |
gaaaatattgttttgcaagaatcaatttcggatacttggtcttggaaacttgatcaagctcaaggttattttgttaaaggaatttacaacttgttgacgc |
564 |
Q |
| |
|
|| |||||||||||||| |||||||||| |||||| |||||||| ||| |||||| || ||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
10107647 |
gacaatattgttttgcaggaatcaattttggatacctggtcttgaaaaattgatccaggtcaaggttattctgttaaaggaatttacaatttgttgatcc |
10107746 |
T |
|
| Q |
565 |
atgatgatcattaagtctaaacacctct-atggagatcatttggaacaaatcagtatccc----tcaaagtgtcactttttgcaaggagactactgaaaa |
659 |
Q |
| |
|
||||||||||| ||||| || ||||| | | |||||||||||| ||||||| ||| || | | |||||||||||||||||| ||| || ||||| || |
|
|
| T |
10107747 |
atgatgatcatcaagtccaagcacctttcacggagatcatttgcaacaaattagtgtctcttaattaaagtgtcactttttgcatggacaccactgataa |
10107846 |
T |
|
| Q |
660 |
ataggct |
666 |
Q |
| |
|
||||||| |
|
|
| T |
10107847 |
ataggct |
10107853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 10107217 - 10107349
Alignment:
| Q |
1 |
ccttccatttctaaatatgagattttagtctactagctaatttaatattgtattgtttgaaaaatagtgttgtagattacatgttgattagggtgggtta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| ||||||||||| | ||||||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10107217 |
ccttccatttctaaatatgagattttagtctcttatctaattttatattgtattgctggaaaaatggtgttggagattacttgttgattagggtgggtta |
10107316 |
T |
|
| Q |
101 |
tgacacaaaatcttgacagcaaaatatggggta |
133 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||| |
|
|
| T |
10107317 |
tgacataaagtcttagcagcaaaatatggggta |
10107349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 27246 - 27135
Alignment:
| Q |
41 |
tttaatattgtattgtttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggtagagggtg |
140 |
Q |
| |
|
|||||||||||| |||| | ||||| | ||| | ||||||||||| | | |||| |||||| ||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
27246 |
tttaatattgtactgttgggaaaatggatttggatattacatgttggtcatggtgcgttatggtacaaaattttgatagcaaaatatgggatagagggtg |
27147 |
T |
|
| Q |
141 |
gtcgtattagag |
152 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27146 |
gtcgtattagag |
27135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 572
Target Start/End: Complemental strand, 43941813 - 43941744
Alignment:
| Q |
503 |
gtcttggaaacttgatcaagctcaaggttattttgttaaaggaatttacaacttgttgacgcatgatgat |
572 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
43941813 |
gtcttgaaaacttgatcaaactcaatgttattctgttaaaggagtttacaatgtgttgacgcatgatgat |
43941744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University