View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14334_high_1 (Length: 677)
Name: NF14334_high_1
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Complemental strand, 30151085 - 30150424
Alignment:
| Q |
1 |
ttatgtaagcttataaataagtggacttatcatgataagcgcttgaacaataaactgtacatgtaagcttatgcctaagtgggcttatcatgataggcga |
100 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30151085 |
ttatgcaagcttataaataagtgggcttatcatgataagcgcttgaacaataaactgtacatgtaagcttatgcctaagtgggcttatcatgataggcga |
30150986 |
T |
|
| Q |
101 |
ttgggcaataagctgtacataagctgcacatccaaagagtaccatgattatattcagcgttgtctttaaaaggatagtccaattctcaaatgccaatgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30150985 |
ttgggcaataagctgtacataagctgcaaatccaaagagtaccatgattatattcagcgttgtcttgaaaaggatagtccaattctcaaatgccaatgac |
30150886 |
T |
|
| Q |
201 |
nnnnnnnn-ccttatactatttcttcagaaatcaaattaactacatgatttcttgcaacttatagtgaatgtttccatgcaacttattttttagagttat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
30150885 |
aaaaaacaaccttatactatttcttcagaaatcaaattaactacatgatttcttgcaacttatagtgaatgttttcatgcaacttattttttagagtaat |
30150786 |
T |
|
| Q |
300 |
tgcagcaaatgacagtatttatctgatacaagttctacaaaataggtataaccccaacttgatcacaacactcaagtcacaaagagaagtatagaaaagc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
30150785 |
tgcagcaaatgacagtatttatctgatacaagttctacaaaataggtataaccccaacttgatcacagcactcatatcacaaagagaagtatagaaaagc |
30150686 |
T |
|
| Q |
400 |
aaattcaacaaaacaaacaatgtcaatcaattctaagtttttatactaaggaatattgcaatactattatacaacttcnnnnnnncagaactagaagaat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
30150685 |
aaattcaacaaaacaaacaatgtcaatcaattctaagtttttatactaaggaatattgcaaaactattatacaacttctttttttcagaactagaagaat |
30150586 |
T |
|
| Q |
500 |
tcatttaacactacactacagattattttcaggtacgatttatcaaaaccggttctaatttcaatcctattagttcatttcaccaatcagtaaatcatcg |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30150585 |
tcatttaacactacactacagattattttcaggtacgatttatcaaaaccgtttctaatttcaatcctattagttcatttcaccaatcagtaaatcatcg |
30150486 |
T |
|
| Q |
600 |
ttacacaatttcatacaaaaatcagaatcataaaagaaagaatttaaaaacaataccttcat |
661 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30150485 |
ttacacaatttcatacaaaaatcagaatcataaaagaaagaatttaaaaacaataccttcat |
30150424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 540 - 643
Target Start/End: Original strand, 42320947 - 42321050
Alignment:
| Q |
540 |
tatcaaaaccggttctaatttcaatcctattagttcatttcaccaatcagtaaatcatcgttacacaatttcatacaaaaatcagaatcataaaagaaag |
639 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
42320947 |
tatcaaaaccgtatctaatttcaatcctattggttcatttcaccattcagtaaatcatctttacacaatttcatacaaaaatcagaatcaaaaaagaaag |
42321046 |
T |
|
| Q |
640 |
aatt |
643 |
Q |
| |
|
|||| |
|
|
| T |
42321047 |
aatt |
42321050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 400 - 522
Target Start/End: Original strand, 42320783 - 42320907
Alignment:
| Q |
400 |
aaattcaacaaaacaaacaatgtcaatcaattcta----agtttttatactaaggaatattgcaatactattatacaacttcnnnnnnncagaactagaa |
495 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||||| || |||||||||| |
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| T |
42320783 |
aaattcaacagaacaaacaatgtcaatcaaatcaattcaagtttttatactaaggaatattcaaatactattatacaacctc--tttttcagaactagag |
42320880 |
T |
|
| Q |
496 |
gaattcatttaacactacactacagat |
522 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
42320881 |
gaattcatttaacactacaatacagat |
42320907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 42320510 - 42320619
Alignment:
| Q |
222 |
cttcagaaatcaaattaactacatgatttcttgcaacttatagtgaatgtttccatgcaacttatttt-ttagagttattgcagc-aaatgacagtattt |
319 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||| || || | ||||||| |||||| ||||||| |||||||| |||||||||||||| |
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|
| T |
42320510 |
cttcagaaatcaaattaactccatgttttcgtgcaacttataacaaaagtattgatgcaacatattttcttagagtaattgcagctaaatgacagtattt |
42320609 |
T |
|
| Q |
320 |
atctgataca |
329 |
Q |
| |
|
|||||||||| |
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|
| T |
42320610 |
atctgataca |
42320619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 42320681 - 42320728
Alignment:
| Q |
324 |
gatacaagttctacaaaataggtataaccccaacttgatcacaacact |
371 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42320681 |
gatacaagttttacaaaataggtataacaccaacttgatcacaacact |
42320728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 2719414 - 2719352
Alignment:
| Q |
62 |
tgtaagcttatgcctaagtgggcttatcatgataggcgattgggcaataagctgtacataagctg |
126 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||| ||| || |||||||||| |||||||| |
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|
| T |
2719414 |
tgtaagcttatgcgtaagtg--cttatcatgataagcgtttgtgctataagctgtaaataagctg |
2719352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 7319135 - 7319198
Alignment:
| Q |
61 |
atgtaagcttatgcctaagtgggcttatcatgataggcgattgggcaataagctgtacataagctg |
126 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||| ||| || |||||||||| |||||||| |
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|
| T |
7319135 |
atgtaagcttatgcataagtg--cttatcatgataagcgcttgtgctataagctgtaaataagctg |
7319198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41407249 - 41407207
Alignment:
| Q |
1 |
ttatgtaagcttataaataagtggacttatcatgataagcgcttg |
45 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
41407249 |
ttatgtaagcttatacataagtg--cttatcatgataagcgcttg |
41407207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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