View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_high_13 (Length: 391)
Name: NF14334_high_13
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_high_13 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 9696098 - 9695905
Alignment:
| Q |
21 |
atcatgaagctgaatctacacttaaactatgcgctaatataaacctaaaaactgtttgttcatcaaaaaacagctttggatctaaaaagtttcccaatta |
120 |
Q |
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| T |
9696098 |
atcatgaagctgaatctacacttaaactatgcgctaatataaacctaacaactgtttgttcatcgcaaaacagctttggatctaaaaagtttcccaatta |
9695999 |
T |
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| Q |
121 |
cattccaacctataataatgaaaattattctattgcagttactcctacgcttcttccttcagcaccaccaactttactcctcatcctcctcctg |
214 |
Q |
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| T |
9695998 |
cattccaacctataataatgaaaattattctattgcagttaatcctacgcttcttccttcagcaccaccaaccttactcctcatcctcctcctg |
9695905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 9695791 - 9695742
Alignment:
| Q |
328 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
377 |
Q |
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| T |
9695791 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
9695742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 14700 - 14748
Alignment:
| Q |
329 |
ttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
377 |
Q |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctca |
14748 |
T |
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