View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14334_high_14 (Length: 391)
Name: NF14334_high_14
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_high_14 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 41847341 - 41846957
Alignment:
| Q |
7 |
aagccaagcccaaaccattctggaggctcgagccattcaggtggatctagcccctatggtggctcgaccccttctggaggctcaagcccctcaggtggct |
106 |
Q |
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| T |
41847341 |
aagccaagcccaaaccattctggaggctcgagccattcaggtggatctagcccctatggtggctcgaccccttctggaggctcaagcccctcaggtggct |
41847242 |
T |
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| Q |
107 |
atagcccttcagggggaagtggcaccgcctcgtgcccacgtgatgcactcaaactaggtgtatgtgccaatgtactaaatggattgttgaatgttacttt |
206 |
Q |
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| T |
41847241 |
ctagcccttcagggggaagtggcaccgcctcgtgcccacgtgatgcactcaaactaggtgtatgtgccaatgtactaaatggattgttgaatgttactct |
41847142 |
T |
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| Q |
207 |
gggtcagccaccagtgacaccatgctgcacactcctaaatggccttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaacattttg |
306 |
Q |
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| T |
41847141 |
gggtcagccaccagtgacaccatgctgcaccctcctaaatggccttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaacattttg |
41847042 |
T |
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| Q |
307 |
gggatcaatctcaaccttcctatctcacttagcttgcttctcaatgtttgctcaaagcaagcaccacgtgatttcctatgctact |
391 |
Q |
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| T |
41847041 |
gggatcaatctcaaccttcctatctcacttagcttgcttctcaatgtttgctcaaagcaagcaccacgtgatttccaatgctact |
41846957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 139 - 361
Target Start/End: Complemental strand, 41833616 - 41833394
Alignment:
| Q |
139 |
tgcccacgtgatgcactcaaactaggtgtatgtgccaatgtactaaatggattgttgaatgttactttgggtcagccaccagtgacaccatgctgcacac |
238 |
Q |
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| T |
41833616 |
tgcccacgtgatgctctcaaacttggtgtatgtgccaatgtcctaagtgggttgttgaatttaactttgggtaaaccaccagtaaccccttgttgctcac |
41833517 |
T |
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| Q |
239 |
tcctaaatggccttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaacattttggggatcaatctcaaccttcctatctcacttag |
338 |
Q |
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| T |
41833516 |
tcctaaatggccttgttgatctcgaggctgcagcatgcctttgcactgcccttaaagctaacattttgggcattaatctcaaccttccaatttcactaag |
41833417 |
T |
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| Q |
339 |
cttgcttctcaatgtttgctcaa |
361 |
Q |
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| T |
41833416 |
cttgcttctcaatgtttgctcaa |
41833394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 41820524 - 41820611
Alignment:
| Q |
212 |
agccaccagtgacaccatgctgcacactcctaaatggccttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaa |
299 |
Q |
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| T |
41820524 |
agccaccaaagacaccatgctgctctctcattgatggtcttgctaatcttgaagctgctgtgtgcctttgcactgctcttaaggctaa |
41820611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 44829805 - 44829718
Alignment:
| Q |
212 |
agccaccagtgacaccatgctgcacactcctaaatggccttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaa |
299 |
Q |
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| T |
44829805 |
agccaccaaagacaccatgctgctctctcattgatgatcttgctaatcttgaagctgctgtgtgcctttgcactgctcttaaggctaa |
44829718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 41841980 - 41842030
Alignment:
| Q |
253 |
gttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaacatt |
303 |
Q |
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| T |
41841980 |
gttgatcttgaagttgcagtttgtctttgcactgccatcaaagctaacatt |
41842030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 9738642 - 9738691
Alignment:
| Q |
250 |
cttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaa |
299 |
Q |
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| T |
9738642 |
cttgctgatcttgaagctgctgcttgcctttgcactgcccttaaagctaa |
9738691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 9757361 - 9757413
Alignment:
| Q |
247 |
ggccttgttgatcttgaagctgctgtgtgtctttgcactgcccttaaagctaa |
299 |
Q |
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| T |
9757361 |
ggccttgttgatttagacgcttctgtgtgtctttgcactgcacttaaagctaa |
9757413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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