View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14334_high_6 (Length: 583)
Name: NF14334_high_6
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 28111352 - 28110915
Alignment:
| Q |
11 |
gcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111352 |
gcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtcta |
28111253 |
T |
|
| Q |
111 |
ggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111252 |
ggaataagaagattcagaaggggtatcggataatccggcacgcagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttt |
28111153 |
T |
|
| Q |
211 |
tggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111152 |
tggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtgg |
28111053 |
T |
|
| Q |
311 |
aatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111052 |
aatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggag |
28110953 |
T |
|
| Q |
411 |
tatatgacagcctcattgctgtcctgcttctttgcacc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110952 |
tatatgacagcctcattgctgtcctgcttctttgcacc |
28110915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 449 - 583
Target Start/End: Complemental strand, 40383213 - 40383080
Alignment:
| Q |
449 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
|
| Q |
549 |
caaagatgcttcctatattagtgataacttgaatt |
583 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaatt |
40383080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 33131663 - 33131359
Alignment:
| Q |
11 |
gcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtcta |
110 |
Q |
| |
|
||||||||| ||||||| || |||||| |||||| ||||| | ||| ||||||||||||| || || ||| |||| |||||||| |||| | | ||| |
|
|
| T |
33131663 |
gcaacagcaatttggactaatcttctgagatggcttggttttgactatcatccaccaccggatcttttctatcattggcagtggtggaatgactcggcta |
33131564 |
T |
|
| Q |
111 |
ggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttt |
210 |
Q |
| |
|
||||||||||| || |||||| |||||||| || ||||| | ||| ||||||| ||||||| | |||||||||| ||||| ||||| || ||| | |
|
|
| T |
33131563 |
ggaataagaaggttaggaagggttatcggattatttggcatgcggcggtttggactatctggaaaattagaaatgattttatctttaataactctgtctg |
33131464 |
T |
|
| Q |
211 |
tggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtgg |
310 |
Q |
| |
|
||| |||| || ||||||||| |||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| | | | |||||||| ||| |
|
|
| T |
33131463 |
cggtgttgatgaagtggtggaggcaattaaggtgttagcttggcggtgggtattgagtcgcttgaatttgccggtttgtttatttaaagaatggacatgg |
33131364 |
T |
|
| Q |
311 |
aatcc |
315 |
Q |
| |
|
||||| |
|
|
| T |
33131363 |
aatcc |
33131359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 21867543 - 21867286
Alignment:
| Q |
85 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
184 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21867543 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21867444 |
T |
|
| Q |
185 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
284 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21867443 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21867344 |
T |
|
| Q |
285 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
342 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21867343 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21867286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 21923404 - 21923147
Alignment:
| Q |
85 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
184 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21923404 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21923305 |
T |
|
| Q |
185 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
284 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21923304 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21923205 |
T |
|
| Q |
285 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
342 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21923204 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21923147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
191 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
263 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 24836897 - 24837334
Alignment:
| Q |
11 |
gcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtcta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836897 |
gcaacagcagtttggaccaagcttctgtcatggatcggtttcaattattatcgaccaccggacctgtttcatctttggaagtggtgggatgagttgtcta |
24836996 |
T |
|
| Q |
111 |
ggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836997 |
ggaataagaagattcagaaggggtatcggataatctggcacgcagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttt |
24837096 |
T |
|
| Q |
211 |
tggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtgg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837097 |
tggtattgacgacatggtggaggatattaaggtgttagcttggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtgg |
24837196 |
T |
|
| Q |
311 |
aatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837197 |
aatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggag |
24837296 |
T |
|
| Q |
411 |
tatatgacagcctcattgctgtcctgcttctttgcacc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837297 |
tatatgacagcctcattgctgtcctgcttctttgcacc |
24837334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 430
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
362 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
430 |
Q |
| |
|
|||||| ||||||| | ||||||||||| | |||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 34326122 - 34326558
Alignment:
| Q |
11 |
gcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtcta |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||| | |||| |||||||| ||||||||||||||||||||| |||||||||||| | |
|
|
| T |
34326122 |
gcaacagcagtttgaaccaagcttctgtcgtggctcggtttcaattttcatccgccaccggatttgtttcatctttggaagtggttggatgagttgtcaa |
34326221 |
T |
|
| Q |
111 |
ggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttt |
210 |
Q |
| |
|
|||||||||||||| |||||| |||||||| || |||||| | ||| ||||||| || |||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
34326222 |
ggaataagaagatttggaagggttatcggattatttggcacgccgcggtttggactatttggagagttagaaatgacttcattttcaacaattctccttt |
34326321 |
T |
|
| Q |
211 |
tggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtgg |
310 |
Q |
| |
|
| | ||||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||| ||| |
|
|
| T |
34326322 |
tcgcattgatgagatggtggaggacattaaggtgttagcatggaggtgggttttgagccgcttgaa-ttgccggtttgtttgtactacaaatggacttgg |
34326420 |
T |
|
| Q |
311 |
aatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggag |
410 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||| ||| || ||| |||| | || |||||||||||||||||| |||| | ||| ||||||||| |
|
|
| T |
34326421 |
aatccacaagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggag |
34326520 |
T |
|
| Q |
411 |
tatatgacagcctcattgctgtcctgcttctttgcacc |
448 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34326521 |
tatatgacagcctcgctgctgtcctgcttctttgcacc |
34326558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 239 - 448
Target Start/End: Original strand, 4028425 - 4028634
Alignment:
| Q |
239 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
338 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
|
| Q |
339 |
ggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
438 |
Q |
| |
|
||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4028525 |
ggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgct |
4028624 |
T |
|
| Q |
439 |
tctttgcacc |
448 |
Q |
| |
|
|||||||||| |
|
|
| T |
4028625 |
tctttgcacc |
4028634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
393 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
438 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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