View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14334_high_7 (Length: 568)
Name: NF14334_high_7
Description: NF14334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14334_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 186 - 537
Target Start/End: Complemental strand, 1716865 - 1716514
Alignment:
| Q |
186 |
acctgtagatgattcagaggagaaaaacacaattccatcaaaaagtaacatgcggatggccatgaggtggttggttgagggctgcaaacctggggattca |
285 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1716865 |
acctgtagatgattcagaagagaaaaacacaattccatcaaaaagtaacatgcggatggccatgaggtggttggttgagggctgcaaacctggggattca |
1716766 |
T |
|
| Q |
286 |
ttggtgttttacttctgtggtcatgcatcaagggttaaagaccgtaacgtggatgaggttgatgggtatgatgaagcaatatgccctgtcgattatgagc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1716765 |
ttggtgttttacttctgtggtcatgcatcaagggttaaagaccgtaacgtggatgaggttgatgggtatgatgaagcaatatgccctgtcgattatgagc |
1716666 |
T |
|
| Q |
386 |
aggaggggatgatactcgatgatgaaatcaatgctacaattgttaggcctctacctcatggtgccaaactacatgcccttgttgatgcatcctttagcgg |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1716665 |
aggaggggatgatactcgatgatgaaatcaatgctacaattgttaggcctctacctcatggtgccaaactacatgcccttgttgatgcatcctttagcgg |
1716566 |
T |
|
| Q |
486 |
gacaattcttgacataccatttgtatgcaagatgaaccggttagttagttag |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1716565 |
gacaattcttgacataccatttgtatgcaagatgaaccggttagttagttag |
1716514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 1717040 - 1716927
Alignment:
| Q |
11 |
gaagaagcttaaaggttctgtgaataatgctcggtgcatgaaacattttctgattgacaagttgggatttcctggaaattccatttgcatgctcacaggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717040 |
gaagaagcttaaaggttctgtgaataatgctcggtgcatgaaacattttctgattgacaagttgggatttcctggaaattccatttgcatgctcacaggt |
1716941 |
T |
|
| Q |
111 |
actttctgttcaac |
124 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1716940 |
actttctgttcaac |
1716927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 231 - 461
Target Start/End: Complemental strand, 1713202 - 1712972
Alignment:
| Q |
231 |
taacatgcggatggccatgaggtggttggttgagggctgcaaacctggggattcattggtgttttacttctgtggtcatgcatcaagggttaaagaccgt |
330 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||||||| |||| || || ||||||||| || |||||| || |||| ||| |||| ||| | |
|
|
| T |
1713202 |
taacatgagaatggcaatgaggtggttggttgagggctgccaaccaggagactcattggtgcttcacttctcaggacatggatcgagggaagtagattat |
1713103 |
T |
|
| Q |
331 |
aacgtggatgaggttgatgggtatgatgaagcaatatgccctgtcgattatgagcaggaggggatgatactcgatgatgaaatcaatgctacaattgtta |
430 |
Q |
| |
|
| | |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
1713102 |
agcatggatgaggttgatgggtatgatgaagctatatgccctgttgattatgagagtgaggggaaaattctcgatgatgaaatcaacgctacaattgtta |
1713003 |
T |
|
| Q |
431 |
ggcctctacctcatggtgccaaactacatgc |
461 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |
|
|
| T |
1713002 |
ggcctctacctcatggttccaaacttcatgc |
1712972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 475
Target Start/End: Original strand, 37410527 - 37410657
Alignment:
| Q |
345 |
tgatgggtatgatgaagcaatatgccctgtcgattatgagcaggaggggatgatactcgatgatgaaatcaatgctacaattgttaggcctctacctcat |
444 |
Q |
| |
|
|||| |||||||| | ||||| || ||||| ||| ||||||| |||||| ||| || || |||| || ||||| |||||||||||||| ||||| | |
|
|
| T |
37410527 |
tgataggtatgataatgcaatttgtcctgttgatcatgagcacaaggggaagatgctgaataatgagattaatgcaacaattgttaggccactaccattt |
37410626 |
T |
|
| Q |
445 |
ggtgccaaactacatgcccttgttgatgcat |
475 |
Q |
| |
|
||||| ||||| |||||| || ||||||||| |
|
|
| T |
37410627 |
ggtgctaaacttcatgccattattgatgcat |
37410657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University